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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
90
ChIP-seq
35
ATAC-seq
8
total RNA-seq
6
WGBS
5
pCHi-C
2
single cell RNA-seq
1
DNase-seq
1
RNA microarray
Assay category
90
DNA binding
36
DNA accessibility
10
Transcription
6
DNA methylation
Target of assay
47
histone
47
histone modification
43
control
28
broad histone mark
19
narrow histone mark
Date released
61
August, 2017
39
February, 2023
18
October, 2018
10
October, 2019
4
February, 2020
4
June, 2019
3
August, 2021
3
March, 2020
2
February, 2021
2
May, 2019
1
August, 2018
1
May, 2021
Available data
39
bam
36
bed narrowPeak
28
fastq
23
tagAlign
9
tsv
3
bigWig
2
bed bedMethyl
2
bigBed bedMethyl
1
bed bed3+
1
bed broadPeak
1
bedpe bed3+
1
bigBed broadPeak
1
bigBed narrowPeak
Organism
147
Homo sapiens
Biosample type
116
tissue
24
in vitro differentiated cells
5
primary cell
2
cell line
1
stem cell
Organ
288
pancreas
225
kidney
213
epithelium
205
heart
166
liver
122
brain
95
connective tissue
89
bone element
71
blood vessel
71
vasculature
65
adipose tissue
48
artery
27
eye
26
limb
23
musculature of body
20
lung
14
blood
14
bodily fluid
12
nerve
11
spleen
8
embryo
5
gonad
5
ovary
5
vein
4
skeleton
2
intestine
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
pituitary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
147
AMP
1
T1D
Genome assembly (visualization)
694
GRCh38
hg19
Lab
147
AMP-T2D consortium
1
Kyle Gaulton, UCSD
Audit category:
5
inconsistent ontology term
assembly!
hg19
BIOSAMPLE
ASSAY
148 results
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ChIP-seq
ATAC-seq
total RNA-seq
WGBS
pCHi-C
single cell RNA-seq
DNase-seq
RNA microarray
tissue
coronary artery
2
35
1
subcutaneous abdominal adipose tissue
35
3
subcutaneous adipose tissue
10
1
1
omental fat pad
8
1
tibial artery
5
1
+ See 4 more…
in vitro differentiated cells
adipocyte
19
1
immature adipocyte
2
preadipocyte
1
white fat cell
1
primary cell
cardiac fibroblast
2
1
adult endothelial progenitor cell
1
mesenchymal stem cell
1
cell line
smooth muscle cell of the coronary artery
2
stem cell
mesenchymal stem cell
1
See all biosamples
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