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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
56
total RNA-seq
45
ATAC-seq
38
ChIP-seq
11
single cell RNA-seq
10
snATAC-seq
4
DNase-seq
2
pCHi-C
Assay category
67
Transcription
59
DNA accessibility
38
DNA binding
Target of assay
24
histone
24
histone modification
14
broad histone mark
10
narrow histone mark
9
control
5
transcription factor
1
RNA binding protein
Date released
66
February, 2021
35
February, 2023
30
October, 2019
19
April, 2020
5
May, 2019
3
July, 2019
2
August, 2021
2
February, 2020
2
June, 2019
2
March, 2020
Available data
102
bam
85
bigWig
74
bed narrowPeak
60
tsv
25
bigBed narrowPeak
6
tagAlign
4
bed bed3+
4
bed broadPeak
4
bigBed broadPeak
Organism
165
Homo sapiens
Biosample type
98
tissue
66
cell line
2
primary cell
Organ
946
pancreas
791
liver
684
connective tissue
524
epithelium
491
adipose tissue
354
kidney
353
heart
286
brain
236
vasculature
230
blood vessel
159
bone element
141
artery
122
limb
96
musculature of body
69
blood
69
bodily fluid
61
eye
43
nerve
37
embryo
25
spleen
22
vein
20
lung
18
ureter
16
skeleton
5
gonad
5
ovary
2
intestine
2
pericardium
2
pituitary gland
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
147
AMP
19
LungMap
Genome assembly (visualization)
128
GRCh38
93
hg19
Lab
147
AMP-T2D consortium
19
Xin Sun, UCSD
BIOSAMPLE
ASSAY
166 results
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total RNA-seq
ATAC-seq
ChIP-seq
single cell RNA-seq
snATAC-seq
DNase-seq
pCHi-C
tissue
coronary artery
1
36
5
2
tibial artery
1
1
23
2
lung
9
10
1
islet of Langerhans
4
pulmonary artery
2
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cell line
smooth muscle cell of the coronary artery
52
8
6
primary cell
endothelial cell of coronary artery
1
smooth muscle cell of the coronary artery
1
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