Toggle navigation
Home
About
Project overview
Policies
News
Contact
Data
Experiments
Annotations
Single Cell Embeddings
Statistical Models
Gene Perturbations
Data Standards & QC
Pipelines
Consortia
Publications
Tools
Single Cell Browser
Help
Getting started
Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
50
ChIP-seq
12
total RNA-seq
3
pCHi-C
2
ATAC-seq
2
RRBS
Assay category
50
DNA binding
12
Transcription
2
DNA accessibility
2
DNA methylation
Target of assay
25
control
25
histone
25
histone modification
15
narrow histone mark
10
broad histone mark
Date released
25
November, 2017
14
October, 2019
12
February, 2020
9
October, 2017
3
March, 2020
3
May, 2019
2
July, 2019
1
February, 2023
Available data
243
bam
bigWig
203
bed narrowPeak
127
bigBed narrowPeak
118
tagAlign
47
bed broadPeak
38
bigBed broadPeak
35
bed bed3+
27
tsv
21
fastq
3
hdf5
2
bed bedMethyl
2
bigBed bedMethyl
1
bed bed3
1
tagAlign bed3+
Organism
69
Homo sapiens
Biosample type
68
tissue
1
primary cell
Organ
323
pancreas
223
epithelium
223
kidney
169
heart
169
liver
114
connective tissue
101
bone element
81
vasculature
80
blood vessel
66
adipose tissue
64
brain
56
artery
55
eye
31
limb
28
musculature of body
20
lung
16
skeleton
14
blood
14
bodily fluid
12
nerve
9
spleen
8
embryo
7
vein
5
gonad
5
ovary
2
intestine
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
pericardium
1
pituitary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
69
AMP
Genome assembly (visualization)
5
hg19
3
GRCh38
Lab
69
AMP-T2D consortium
Audit category:
1
inconsistent ontology term
Audit category:
1
missing controlled_by
files.file_type!
bigWig
BIOSAMPLE
ASSAY
69 results
search-icon
table-tab-icon
Clear Filters
ChIP-seq
total RNA-seq
pCHi-C
ATAC-seq
RRBS
tissue
brain
9
1
1
cingulate gyrus
8
layer of hippocampus
6
islet of Langerhans
4
1
substantia nigra
4
1
+ See 23 more…
primary cell
choroid plexus epithelial cell
1
See all biosamples
Download