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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
52
ChIP-seq
17
total RNA-seq
4
ATAC-seq
4
small RNA-seq
3
Hi-C
3
single cell RNA-seq
2
RRBS
Assay category
52
DNA binding
24
Transcription
4
DNA accessibility
3
3D chromatin structure
2
DNA methylation
Target of assay
31
control
24
histone
24
histone modification
15
narrow histone mark
9
broad histone mark
Date released
27
November, 2017
17
July, 2019
15
October, 2019
12
February, 2020
10
October, 2017
March, 2020
3
May, 2019
1
February, 2023
Available data
243
bam
222
bigWig
bed narrowPeak
127
bigBed narrowPeak
118
tagAlign
47
bed broadPeak
38
bigBed broadPeak
35
bed bed3+
24
tsv
21
fastq
3
hdf5
2
bed bedMethyl
2
bigBed bedMethyl
1
bed bed3
1
tagAlign bed3+
Organism
85
Homo sapiens
Biosample type
75
tissue
10
primary cell
Organ
721
pancreas
607
connective tissue
477
adipose tissue
368
epithelium
347
liver
195
heart
169
kidney
151
bone element
99
vasculature
97
blood vessel
81
brain
67
artery
31
musculature of body
30
limb
28
eye
23
embryo
19
lung
16
nerve
15
blood
15
bodily fluid
10
spleen
8
skeleton
8
vein
4
gonad
4
ovary
2
pericardium
1
bone marrow
1
lymph node
1
pituitary gland
1
skin of body
1
spinal cord
1
thymus
Project
85
AMP
Genome assembly (visualization)
23
hg19
16
GRCh38
Lab
85
AMP-T2D consortium
Audit category:
1
inconsistent ontology term
Audit category:
1
missing controlled_by
files.file_type!
bed narrowPeak
month_released!
March, 2020
BIOSAMPLE
ASSAY
85 results
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ChIP-seq
total RNA-seq
ATAC-seq
small RNA-seq
Hi-C
single cell RNA-seq
RRBS
tissue
brain
9
1
1
1
cingulate gyrus
7
layer of hippocampus
6
cerebellum (Hemisphere)
2
1
1
1
islet of Langerhans
4
1
+ See 23 more…
primary cell
astrocyte of the cerebellum
1
1
brain microvascular endothelial cell
1
1
cerebellar granule cell
2
choroid plexus epithelial cell
1
1
Purkinje cell
1
+ See 1 more…
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