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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
93
single cell RNA-seq
70
ChIP-seq
45
ATAC-seq
15
total RNA-seq
6
pCHi-C
4
RRBS
3
Hi-C
2
WGBS
Assay category
108
Transcription
70
DNA binding
45
DNA accessibility
6
DNA methylation
3
3D chromatin structure
Target of assay
45
control
25
histone
25
histone modification
15
narrow histone mark
10
broad histone mark
Date released
92
August, 2021
37
February, 2023
25
November, 2017
15
February, 2020
15
October, 2019
10
April, 2019
10
February, 2021
9
May, 2019
9
October, 2017
8
March, 2020
6
July, 2019
2
June, 2019
Available data
454
bam
bigWig
394
bed narrowPeak
221
bigBed narrowPeak
195
tsv
124
tagAlign
77
bed broadPeak
68
bigBed broadPeak
65
bed bed3+
21
fastq
10
bed bedMethyl
10
bigBed bedMethyl
3
bedpe bed3+
3
hdf5
3
hic
1
bed bed3
1
tagAlign bed3+
Organism
238
Homo sapiens
Biosample type
224
tissue
10
cell line
4
primary cell
Organ
323
pancreas
223
epithelium
223
kidney
169
heart
169
liver
114
connective tissue
101
bone element
81
vasculature
80
blood vessel
66
adipose tissue
64
brain
56
artery
55
eye
31
limb
28
musculature of body
20
lung
16
skeleton
14
blood
14
bodily fluid
12
nerve
9
spleen
8
embryo
7
vein
5
gonad
5
ovary
2
intestine
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
pericardium
1
pituitary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
238
AMP
Genome assembly (visualization)
46
GRCh38
18
hg19
Lab
238
AMP-T2D consortium
Audit category:
3
inconsistent ontology term
Audit category:
1
missing controlled_by
files.file_type!
bigWig
BIOSAMPLE
ASSAY
238 results
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single cell RNA-seq
ChIP-seq
ATAC-seq
total RNA-seq
pCHi-C
RRBS
Hi-C
WGBS
tissue
coronary artery
2
35
1
heart left ventricle
18
6
1
1
1
2
heart right ventricle
17
2
1
1
right cardiac atrium
18
1
1
left cardiac atrium
18
+ See 38 more…
cell line
smooth muscle cell of the coronary artery
2
8
primary cell
cardiac fibroblast
2
1
choroid plexus epithelial cell
1
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