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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
53
ChIP-seq
8
ATAC-seq
7
total RNA-seq
4
DNase-seq
4
Hi-C
1
WGBS
1
pCHi-C
Assay category
53
DNA binding
12
DNA accessibility
7
Transcription
4
3D chromatin structure
1
DNA methylation
Target of assay
53
histone
53
histone modification
34
broad histone mark
19
narrow histone mark
control
Date released
57
October, 2019
June, 2019
6
February, 2021
6
May, 2019
5
July, 2019
3
February, 2020
1
March, 2020
Available data
65
bam
60
bed narrowPeak
59
bigWig
52
bigBed narrowPeak
8
tsv
4
bed bed3+
4
bed broadPeak
4
bigBed broadPeak
1
bed bedMethyl
1
bigBed bedMethyl
Organism
78
Homo sapiens
Biosample type
78
tissue
Organ
889
pancreas
681
liver
634
connective tissue
476
epithelium
466
adipose tissue
340
heart
262
kidney
225
brain
207
vasculature
204
blood vessel
159
bone element
130
artery
73
limb
63
blood
63
bodily fluid
54
eye
49
musculature of body
32
nerve
30
embryo
20
lung
20
vein
17
spleen
16
skeleton
5
gonad
5
ovary
2
intestine
2
pericardium
2
pituitary gland
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
78
AMP
Genome assembly (visualization)
64
GRCh38
64
hg19
Lab
78
AMP-T2D consortium
month_released!
June, 2019
target.investigated_as!
control
BIOSAMPLE
ASSAY
78 results
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ChIP-seq
ATAC-seq
total RNA-seq
DNase-seq
Hi-C
WGBS
pCHi-C
tissue
tibial nerve
24
1
5
2
tibial artery
18
1
1
2
muscle of leg
6
1
gastrocnemius medialis
1
4
islet of Langerhans
5
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