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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
14
total RNA-seq
10
ChIP-seq
10
snATAC-seq
9
single cell RNA-seq
2
pCHi-C
1
GRO-seq
Assay category
23
Transcription
10
DNA accessibility
10
DNA binding
Target of assay
16
histone
histone modification
12
narrow histone mark
7
control
4
broad histone mark
3
transcription factor
Date released
19
April, 2020
8
August, 2021
7
December, 2017
7
February, 2018
2
March, 2020
2
May, 2021
1
January, 2018
Available data
24
bam
18
bigWig
16
tsv
15
fastq
3
bed narrowPeak
1
bed bed3+
Organism
45
Homo sapiens
Biosample type
21
tissue
17
in vitro differentiated cells
8
cell line
Organ
795
pancreas
688
liver
606
connective tissue
459
adipose tissue
431
epithelium
324
kidney
296
heart
165
vasculature
160
blood vessel
159
bone element
121
artery
99
brain
73
limb
68
blood
68
bodily fluid
63
musculature of body
58
eye
25
embryo
20
lung
19
nerve
19
spleen
18
ureter
16
skeleton
7
vein
2
intestine
2
pericardium
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
gonad
1
large intestine
1
mammary gland
1
ovary
1
pituitary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
27
AMP
19
LungMap
Genome assembly (visualization)
18
GRCh38
18
hg19
1
hg18
Lab
27
AMP-T2D consortium
19
Xin Sun, UCSD
Audit category:
4
inconsistent ontology term
Audit category:
1
inconsistent control read length
target.investigated_as!
histone modification
BIOSAMPLE
ASSAY
46 results
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total RNA-seq
ChIP-seq
snATAC-seq
single cell RNA-seq
pCHi-C
GRO-seq
tissue
lung
10
9
1
ovary
1
in vitro differentiated cells
pancreatic endoderm
4
8
1
Hepatic endoderm
2
mesodermal cell (lineage marker-negative)
1
mesodermal cell (pacemaker intermediate)
1
cell line
H1-hESC
8
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