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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
33
total RNA-seq
15
ChIP-seq
6
MeRIP-seq
5
single cell RNA-seq
2
Capture-C
1
Hi-C
Assay category
38
Transcription
DNA accessibility
15
DNA binding
1
3D chromatin structure
Target of assay
12
histone
12
histone modification
6
broad histone mark
6
narrow histone mark
5
control
3
nucleotide modification
1
RNA binding protein
1
transcription factor
Date released
26
February, 2021
15
November, 2019
6
November, 2020
5
July, 2018
5
May, 2021
3
March, 2020
2
August, 2021
Available data
53
bam
51
bigWig
38
tsv
13
bed narrowPeak
5
fastq
1
bedpe bed3+
1
hic
Organism
62
Homo sapiens
Biosample type
57
cell line
5
primary cell
Organ
84
bone element
70
epithelium
62
pancreas
22
kidney
15
connective tissue
8
musculature of body
6
embryo
5
heart
3
brain
1
stomach
1
urinary bladder
Project
58
AMP
4
T1D
Genome assembly (visualization)
52
hg19
51
GRCh38
Lab
56
AMP-T2D consortium
6
Rohit N. Kulkarni, M.D., Ph.D.
Audit category:
62
inconsistent ontology term
3
audit script error
assay_slims!
DNA accessibility
BIOSAMPLE
ASSAY
62 results
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total RNA-seq
ChIP-seq
MeRIP-seq
single cell RNA-seq
Capture-C
Hi-C
cell line
EndoC_BH1
33
15
6
2
1
primary cell
co-expressing pancreatic endocrine cell
2
unclassified pancreatic endocrine cell
2
pancreatic acinar cell
1
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