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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
19
ATAC-seq
15
ChIP-seq
6
MeRIP-seq
2
Capture-C
1
Hi-C
Assay category
Transcription
19
DNA accessibility
15
DNA binding
1
3D chromatin structure
Target of assay
12
histone
12
histone modification
6
broad histone mark
6
narrow histone mark
5
control
3
nucleotide modification
1
RNA binding protein
1
transcription factor
Date released
17
May, 2021
15
November, 2019
6
November, 2020
3
March, 2020
2
August, 2021
Available data
16
bam
15
bigWig
14
bed narrowPeak
1
bedpe bed3+
1
hic
1
tsv
Organism
43
Homo sapiens
Biosample type
43
cell line
Organ
84
bone element
56
epithelium
43
pancreas
20
kidney
17
connective tissue
9
musculature of body
6
heart
4
embryo
2
brain
1
adipose tissue
1
limb
1
liver
1
stomach
1
urinary bladder
1
vasculature
Project
41
AMP
2
T1D
Genome assembly (visualization)
17
hg19
14
GRCh38
Lab
37
AMP-T2D consortium
6
Rohit N. Kulkarni, M.D., Ph.D.
Audit category:
43
inconsistent ontology term
4
audit script error
assay_slims!
Transcription
BIOSAMPLE
ASSAY
43 results
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ATAC-seq
ChIP-seq
MeRIP-seq
Capture-C
Hi-C
cell line
EndoC_BH1
19
15
6
2
1
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