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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
51
WGBS
9
Hi-C
2
RRBS
Assay category
479
Transcription
218
DNA binding
173
DNA accessibility
53
DNA methylation
9
3D chromatin structure
Date released
41
May, 2022
6
February, 2021
4
November, 2018
3
October, 2022
2
July, 2019
2
November, 2019
1
August, 2021
1
March, 2019
1
March, 2020
1
October, 2019
Available data
41
zippedFastqFolder
10
fastq
7
bedpe bed3+
7
hic
6
bed bedMethyl
6
bigBed bedMethyl
6
tsv
5
bigWig
4
bam
3
cool
1
bed bed3+
1
bedpe
1
hdf5
Organism
62
Homo sapiens
Biosample type
50
primary cell
10
tissue
2
cell line
Organ
62
pancreas
61
epithelium
13
heart
12
musculature of body
11
liver
8
connective tissue
8
vasculature
7
blood vessel
6
adipose tissue
5
brain
5
kidney
5
limb
2
spleen
2
vein
1
eye
1
pericardium
Project
50
HPAP
12
AMP
Genome assembly (visualization)
10
hg19
5
GRCh38
Lab
50
Klaus Kaestner, Upenn
10
AMP-T2D consortium
2
Bing Ren, UCSD
Audit category:
3
audit script error
1
inconsistent ontology term
Audit category:
1
inconsistent assembly
BIOSAMPLE
ASSAY
62 results
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WGBS
Hi-C
RRBS
primary cell
pancreatic alpha cell
31
1
pancreatic beta cell
16
1
pancreatic acinar cell
1
tissue
islet of Langerhans
3
1
pancreas
2
1
1
body of pancreas
2
cell line
EndoC_BH1
1
Panc1
1
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