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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
322
total RNA-seq
ChIP-seq
81
ATAC-seq
11
snATAC-seq
10
MeRIP-seq
8
DNase-seq
6
Hi-C
4
WGBS
2
Capture-C
2
FAIRE-seq
2
RRBS
2
small RNA-seq
1
CRISPR genome editing followed by sgRNA sequencing
1
pCHi-C
Assay category
324
Transcription
102
DNA accessibility
6
3D chromatin structure
6
DNA methylation
Target of assay
5
control
5
nucleotide modification
Date released
120
July, 2018
91
August, 2017
57
May, 2021
42
November, 2019
26
February, 2021
24
May, 2022
19
February, 2023
11
March, 2020
10
November, 2020
8
January, 2021
7
November, 2018
6
April, 2018
6
July, 2019
5
March, 2019
5
October, 2017
5
October, 2019
4
August, 2021
4
June, 2019
1
August, 2022
1
February, 2020
Available data
367
bam
328
bigWig
309
tsv
136
fastq
52
bed narrowPeak
10
bigBed narrowPeak
9
bed broadPeak
8
bed bed3+
7
bigBed broadPeak
6
bed bedMethyl
6
bigBed bedMethyl
6
txt
4
bedpe bed3+
4
hic
1
bedpe
1
hdf5
Organism
451
Homo sapiens
Biosample type
388
tissue
primary cell
64
cell line
Organ
504
connective tissue
452
pancreas
416
adipose tissue
281
kidney
251
heart
229
liver
158
bone element
120
blood vessel
120
vasculature
105
artery
81
epithelium
56
brain
56
limb
54
eye
53
musculature of body
20
lung
18
ureter
16
skeleton
15
embryo
8
nerve
5
spleen
2
intestine
2
thymus
1
adrenal gland
1
blood
1
bodily fluid
1
esophagus
1
gonad
1
large intestine
1
mammary gland
1
ovary
1
pericardium
1
pituitary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
422
AMP
30
T1D
Genome assembly (visualization)
368
hg19
344
GRCh38
Lab
383
AMP-T2D consortium
51
Kyle Gaulton, UCSD
10
Rohit N. Kulkarni, M.D., Ph.D.
4
Bing Ren, UCSD
2
Mark McCarthy, Oxford
1
Maike Sander, UCSD
1
Stephen Parker, UMich
Audit category:
61
inconsistent ontology term
1
audit script error
Audit category:
1
inconsistent assembly
assay_title!
ChIP-seq
biosample_type!
primary cell
BIOSAMPLE
ASSAY
452 results
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total RNA-seq
ATAC-seq
snATAC-seq
MeRIP-seq
DNase-seq
Hi-C
WGBS
Capture-C
FAIRE-seq
RRBS
small RNA-seq
CRISPR genome editing followed by sgRNA sequencing
pCHi-C
tissue
islet of Langerhans
284
58
7
4
1
3
1
1
body of pancreas
3
4
4
2
2
pancreas
2
4
2
1
2
1
1
1
cell line
EndoC_BH1
33
19
6
1
2
1
Panc1
1
1
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