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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
111
ATAC-seq
73
total RNA-seq
ChIP-seq
47
WGBS
11
snATAC-seq
10
MeRIP-seq
8
Hi-C
2
Capture-C
2
RRBS
1
CRISPR genome editing followed by sgRNA sequencing
1
pCHi-C
Assay category
122
DNA accessibility
73
Transcription
49
DNA methylation
8
3D chromatin structure
Target of assay
5
control
5
nucleotide modification
Date released
104
May, 2022
56
February, 2023
22
November, 2019
17
May, 2021
16
September, 2020
10
November, 2020
8
January, 2021
6
February, 2021
5
March, 2019
4
August, 2021
4
July, 2018
4
March, 2020
3
October, 2019
3
October, 2022
2
July, 2019
1
August, 2022
1
February, 2020
Available data
491
bam
bigWig
417
tsv
324
fastq
80
zippedFastqFolder
74
bed narrowPeak
32
bigBed narrowPeak
9
bed broadPeak
8
bed bed3+
7
bedpe bed3+
7
bigBed broadPeak
7
hic
6
bed bedMethyl
6
bigBed bedMethyl
6
txt
3
cool
1
bedpe
1
hdf5
Organism
265
Homo sapiens
Biosample type
142
primary cell
97
tissue
27
cell line
Organ
266
pancreas
210
kidney
195
epithelium
149
heart
101
bone element
58
vasculature
57
blood vessel
52
eye
49
liver
47
artery
36
connective tissue
20
lung
18
brain
16
musculature of body
16
skeleton
13
limb
12
adipose tissue
8
blood
8
bodily fluid
2
intestine
2
thymus
2
vein
1
adrenal gland
1
bone marrow
1
esophagus
1
gonad
1
large intestine
1
mammary gland
1
nerve
1
ovary
1
pericardium
1
pituitary gland
1
skin of body
1
small intestine
1
spinal cord
1
spleen
1
stomach
1
urinary bladder
Project
142
HPAP
96
AMP
28
T1D
Genome assembly (visualization)
49
hg19
22
GRCh38
Lab
142
Klaus Kaestner, Upenn
56
AMP-T2D consortium
51
Kyle Gaulton, UCSD
10
Rohit N. Kulkarni, M.D., Ph.D.
4
Bing Ren, UCSD
2
Mark McCarthy, Oxford
1
Maike Sander, UCSD
Audit category:
26
inconsistent ontology term
4
audit script error
assay_title!
ChIP-seq
files.file_type!
bigWig
BIOSAMPLE
ASSAY
266 results
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Clear Filters
ATAC-seq
total RNA-seq
WGBS
snATAC-seq
MeRIP-seq
Hi-C
Capture-C
RRBS
CRISPR genome editing followed by sgRNA sequencing
pCHi-C
primary cell
pancreatic alpha cell
22
42
31
1
pancreatic beta cell
13
11
16
1
pancreatic acinar cell
4
1
tissue
islet of Langerhans
55
18
7
4
3
1
pancreas
1
4
1
1
1
body of pancreas
1
cell line
EndoC_BH1
17
6
1
2
1
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