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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
377
total RNA-seq
ChIP-seq
152
ATAC-seq
74
single cell RNA-seq
45
WGBS
11
snATAC-seq
10
MeRIP-seq
9
Hi-C
8
DNase-seq
2
Capture-C
2
FAIRE-seq
2
RRBS
2
small RNA-seq
1
CRISPR genome editing followed by sgRNA sequencing
1
pCHi-C
Assay category
453
Transcription
173
DNA accessibility
47
DNA methylation
9
3D chromatin structure
Target of assay
5
control
5
nucleotide modification
Date released
157
July, 2018
104
May, 2022
94
August, 2017
57
May, 2021
56
February, 2023
42
November, 2019
40
September, 2018
39
April, 2018
February, 2021
19
September, 2020
11
March, 2020
10
November, 2020
8
January, 2021
7
August, 2020
7
November, 2018
6
July, 2019
5
March, 2019
5
October, 2017
5
October, 2019
5
September, 2017
4
August, 2021
4
June, 2019
3
August, 2018
3
October, 2022
2
October, 2018
1
August, 2022
1
February, 2020
1
June, 2018
Available data
465
bam
436
bigWig
385
tsv
318
fastq
80
zippedFastqFolder
74
bed narrowPeak
32
bigBed narrowPeak
9
bed broadPeak
8
bed bed3+
7
bedpe bed3+
7
bigBed broadPeak
7
hic
6
bed bedMethyl
6
bigBed bedMethyl
6
txt
3
cool
1
bedpe
1
hdf5
Organism
695
Homo sapiens
Biosample type
388
tissue
270
primary cell
38
cell line
Organ
696
pancreas
363
epithelium
294
kidney
236
liver
199
heart
76
connective tissue
74
vasculature
71
blood vessel
68
brain
57
musculature of body
56
eye
50
limb
47
artery
32
adipose tissue
20
lung
18
ureter
15
embryo
9
blood
9
bodily fluid
9
bone element
8
nerve
8
skeleton
5
spleen
5
vein
2
intestine
2
pericardium
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
gonad
1
large intestine
1
mammary gland
1
ovary
1
pituitary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
520
AMP
146
HPAP
30
T1D
Genome assembly (visualization)
469
hg19
452
GRCh38
Lab
481
AMP-T2D consortium
146
Klaus Kaestner, Upenn
51
Kyle Gaulton, UCSD
10
Rohit N. Kulkarni, M.D., Ph.D.
4
Bing Ren, UCSD
2
Mark McCarthy, Oxford
1
Maike Sander, UCSD
1
Stephen Parker, UMich
Audit category:
40
inconsistent ontology term
4
audit script error
Audit category:
1
inconsistent assembly
assay_title!
ChIP-seq
month_released!
February, 2021
BIOSAMPLE
ASSAY
696 results
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total RNA-seq
ATAC-seq
single cell RNA-seq
WGBS
snATAC-seq
MeRIP-seq
Hi-C
DNase-seq
Capture-C
FAIRE-seq
RRBS
small RNA-seq
CRISPR genome editing followed by sgRNA sequencing
pCHi-C
tissue
islet of Langerhans
284
58
7
4
3
1
1
1
body of pancreas
3
4
2
4
2
pancreas
2
2
4
1
2
1
1
1
primary cell
pancreatic alpha cell
52
35
12
25
1
pancreatic beta cell
21
23
12
16
1
pancreatic acinar cell
4
9
12
1
pancreatic ductal cell
4
4
10
pancreatic delta cell
11
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cell line
EndoC_BH1
7
19
6
1
2
1
Panc1
1
1
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