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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
332
total RNA-seq
74
single cell RNA-seq
6
WGBS
2
ATAC-seq
small RNA-seq
1
pCHi-C
Assay category
406
Transcription
6
DNA methylation
2
DNA accessibility
Date released
153
July, 2018
89
August, 2017
40
May, 2021
39
April, 2018
32
February, 2021
26
September, 2018
20
November, 2019
6
March, 2020
3
August, 2018
2
July, 2019
2
October, 2018
1
August, 2021
1
February, 2020
1
June, 2018
Available data
687
bam
621
bigWig
471
fastq
415
tsv
214
bed narrowPeak
91
bigBed narrowPeak
80
zippedFastqFolder
29
bed bed3+
21
bed broadPeak
19
tagAlign
7
bedpe bed3+
7
bigBed broadPeak
7
hic
6
bed bedMethyl
6
bigBed bedMethyl
6
txt
3
cool
1
bedpe
1
hdf5
Organism
415
Homo sapiens
Biosample type
273
tissue
108
primary cell
34
cell line
Organ
475
connective tissue
415
pancreas
398
adipose tissue
171
liver
167
heart
156
epithelium
68
blood vessel
68
vasculature
58
artery
58
bone element
23
kidney
22
brain
14
embryo
7
limb
7
musculature of body
5
eye
5
nerve
2
intestine
1
adrenal gland
1
esophagus
1
gonad
1
large intestine
1
lung
1
mammary gland
1
ovary
1
pericardium
1
small intestine
1
spinal cord
1
spleen
1
stomach
1
thymus
1
urinary bladder
Project
407
AMP
6
HPAP
2
T1D
Genome assembly (visualization)
406
hg19
404
GRCh38
Lab
408
AMP-T2D consortium
6
Klaus Kaestner, Upenn
1
Bing Ren, UCSD
Audit category:
39
inconsistent ontology term
assay_title!
small RNA-seq
BIOSAMPLE
ASSAY
415 results
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total RNA-seq
single cell RNA-seq
WGBS
ATAC-seq
pCHi-C
tissue
islet of Langerhans
267
1
body of pancreas
3
pancreas
1
1
primary cell
pancreatic alpha cell
10
12
6
pancreatic beta cell
10
12
pancreatic acinar cell
4
12
pancreatic ductal cell
4
10
pancreatic delta cell
11
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cell line
EndoC_BH1
33
1
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