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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
403
total RNA-seq
218
ChIP-seq
113
ATAC-seq
74
single cell RNA-seq
11
snATAC-seq
10
MeRIP-seq
10
WGBS
9
Hi-C
8
DNase-seq
2
Capture-C
2
FAIRE-seq
2
RRBS
2
small RNA-seq
1
CRISPR genome editing followed by sgRNA sequencing
1
pCHi-C
Assay category
113
DNA accessibility
Date released
20
November, 2019
18
May, 2022
16
May, 2021
14
September, 2018
11
February, 2023
7
August, 2020
5
October, 2017
5
September, 2017
4
March, 2019
4
March, 2020
3
August, 2017
3
October, 2019
3
September, 2020
Available data
65
bam
64
bed narrowPeak
56
fastq
41
bigWig
zippedFastqFolder
22
bigBed narrowPeak
2
bed broadPeak
2
tsv
Organism
113
Homo sapiens
Biosample type
62
tissue
32
primary cell
19
cell line
Organ
113
pancreas
75
kidney
64
epithelium
47
heart
46
blood vessel
46
vasculature
45
artery
28
eye
25
connective tissue
23
liver
12
bone element
12
skeleton
8
limb
6
adipose tissue
4
brain
1
blood
1
bodily fluid
1
musculature of body
1
nerve
1
pituitary gland
1
skin of body
1
spleen
Project
92
AMP
11
T1D
10
HPAP
Genome assembly (visualization)
71
hg19
59
GRCh38
Lab
69
AMP-T2D consortium
29
Kyle Gaulton, UCSD
10
Klaus Kaestner, Upenn
2
Mark McCarthy, Oxford
1
Bing Ren, UCSD
1
Maike Sander, UCSD
1
Stephen Parker, UMich
Audit category:
19
inconsistent ontology term
files.file_type!
zippedFastqFolder
BIOSAMPLE
ASSAY
113 results
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Clear Filters
ATAC-seq
tissue
islet of Langerhans
58
body of pancreas
4
primary cell
pancreatic alpha cell
13
pancreatic beta cell
10
pancreatic acinar cell
5
pancreatic ductal cell
4
cell line
EndoC_BH1
19
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