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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
422
total RNA-seq
223
ChIP-seq
180
ATAC-seq
74
single cell RNA-seq
51
WGBS
12
DNase-seq
11
snATAC-seq
10
MeRIP-seq
9
Hi-C
5
pCHi-C
3
RRBS
2
Capture-C
2
FAIRE-seq
2
small RNA-seq
1
CRISPR genome editing followed by sgRNA sequencing
Assay category
180
DNA accessibility
Date released
57
May, 2022
38
February, 2023
20
November, 2019
16
May, 2021
14
September, 2018
7
August, 2020
5
October, 2017
5
September, 2017
4
March, 2019
4
March, 2020
4
October, 2019
3
August, 2017
3
September, 2020
Available data
91
bed narrowPeak
65
bam
56
fastq
41
bigWig
39
zippedFastqFolder
22
bigBed narrowPeak
2
bed broadPeak
2
tsv
Organism
180
Homo sapiens
Biosample type
90
tissue
71
primary cell
19
cell line
Organ
152
pancreas
103
epithelium
75
kidney
47
heart
46
blood vessel
46
vasculature
45
artery
28
eye
25
connective tissue
23
liver
12
bone element
12
skeleton
8
limb
6
adipose tissue
4
brain
1
blood
1
bodily fluid
1
musculature of body
1
nerve
1
pituitary gland
1
skin of body
1
spleen
Project
120
AMP
49
HPAP
11
T1D
Genome assembly (visualization)
98
hg19
59
GRCh38
Lab
97
AMP-T2D consortium
49
Klaus Kaestner, Upenn
29
Kyle Gaulton, UCSD
2
Mark McCarthy, Oxford
1
Bing Ren, UCSD
1
Maike Sander, UCSD
1
Stephen Parker, UMich
Audit category:
19
inconsistent ontology term
BIOSAMPLE
ASSAY
180 results
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Clear Filters
ATAC-seq
tissue
islet of Langerhans
59
retina
15
pigmented layer of retina
12
body of pancreas
4
primary cell
pancreatic alpha cell
35
pancreatic beta cell
23
pancreatic acinar cell
9
pancreatic ductal cell
4
cell line
EndoC_BH1
19
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