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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
410
total RNA-seq
284
ChIP-seq
160
ATAC-seq
74
single cell RNA-seq
52
WGBS
44
DNase-seq
13
Hi-C
11
snATAC-seq
10
MeRIP-seq
2
Capture-C
2
FAIRE-seq
2
RRBS
2
small RNA-seq
1
CRISPR genome editing followed by sgRNA sequencing
1
pCHi-C
Assay category
160
DNA accessibility
Date released
57
May, 2022
20
November, 2019
16
May, 2021
14
September, 2018
11
February, 2023
7
August, 2020
6
February, 2021
5
October, 2017
5
October, 2019
5
September, 2017
4
March, 2019
4
March, 2020
3
August, 2017
3
September, 2020
Available data
73
bam
72
bed narrowPeak
56
fastq
43
bigWig
39
zippedFastqFolder
22
bigBed narrowPeak
2
bed broadPeak
2
tsv
Organism
160
Homo sapiens
Biosample type
71
primary cell
70
tissue
19
cell line
Organ
152
pancreas
103
epithelium
75
kidney
47
heart
46
blood vessel
46
vasculature
45
artery
28
eye
25
connective tissue
23
liver
12
bone element
12
skeleton
8
limb
6
adipose tissue
4
brain
1
blood
1
bodily fluid
1
musculature of body
1
nerve
1
pituitary gland
1
skin of body
1
spleen
Project
100
AMP
49
HPAP
11
T1D
Genome assembly (visualization)
79
hg19
67
GRCh38
Lab
77
AMP-T2D consortium
49
Klaus Kaestner, Upenn
29
Kyle Gaulton, UCSD
2
Mark McCarthy, Oxford
1
Bing Ren, UCSD
1
Maike Sander, UCSD
1
Stephen Parker, UMich
Audit category:
19
inconsistent ontology term
BIOSAMPLE
ASSAY
160 results
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ATAC-seq
primary cell
pancreatic alpha cell
35
pancreatic beta cell
23
pancreatic acinar cell
9
pancreatic ductal cell
4
tissue
islet of Langerhans
58
body of pancreas
4
distal epiphysis of femur
1
distal epiphysis of humerus
1
distal epiphysis of tibia
1
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cell line
EndoC_BH1
19
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