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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
403
total RNA-seq
218
ChIP-seq
152
ATAC-seq
74
single cell RNA-seq
51
WGBS
11
snATAC-seq
10
MeRIP-seq
9
Hi-C
8
DNase-seq
2
Capture-C
2
FAIRE-seq
2
RRBS
2
small RNA-seq
1
CRISPR genome editing followed by sgRNA sequencing
1
pCHi-C
Assay category
11
DNA accessibility
9
3D chromatin structure
Date released
8
January, 2021
3
October, 2022
2
February, 2023
2
November, 2019
1
August, 2021
1
August, 2022
1
March, 2019
1
March, 2020
1
October, 2019
Available data
7
bedpe bed3+
7
hic
3
cool
1
bed bed3+
1
bedpe
1
bigWig
1
hdf5
Organism
20
Homo sapiens
Biosample type
15
tissue
3
primary cell
2
cell line
Organ
20
pancreas
10
lung
8
blood
8
bodily fluid
8
epithelium
7
kidney
7
musculature of body
5
blood vessel
5
vasculature
4
limb
4
liver
3
brain
3
heart
2
vein
1
connective tissue
Project
10
T1D
7
AMP
3
HPAP
Genome assembly (visualization)
8
hg19
1
GRCh38
Lab
10
Kyle Gaulton, UCSD
5
AMP-T2D consortium
3
Klaus Kaestner, Upenn
2
Bing Ren, UCSD
Audit category:
4
audit script error
1
inconsistent ontology term
Audit category:
1
inconsistent assembly
BIOSAMPLE
ASSAY
20 results
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snATAC-seq
Hi-C
tissue
islet of Langerhans
7
3
pancreas
4
1
primary cell
pancreatic acinar cell
1
pancreatic alpha cell
1
pancreatic beta cell
1
cell line
EndoC_BH1
1
Panc1
1
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