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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
397
total RNA-seq
218
ChIP-seq
152
ATAC-seq
80
single cell RNA-seq
51
WGBS
11
snATAC-seq
10
MeRIP-seq
9
Hi-C
8
DNase-seq
2
Capture-C
2
FAIRE-seq
2
RRBS
2
small RNA-seq
1
CRISPR genome editing followed by sgRNA sequencing
1
pCHi-C
Assay category
397
Transcription
51
DNA methylation
Date released
120
July, 2018
89
August, 2017
47
May, 2022
42
February, 2023
41
May, 2021
32
February, 2021
26
September, 2018
20
November, 2019
16
September, 2020
5
March, 2020
4
November, 2018
2
July, 2019
2
October, 2018
1
August, 2021
1
February, 2020
Available data
334
bam
332
tsv
328
bigWig
188
fastq
41
zippedFastqFolder
6
txt
4
bed bedMethyl
4
bigBed bedMethyl
Organism
448
Homo sapiens
Biosample type
287
tissue
128
primary cell
33
cell line
Organ
480
connective tissue
448
pancreas
404
adipose tissue
194
liver
178
epithelium
80
heart
63
blood vessel
63
vasculature
62
bone element
60
kidney
56
artery
19
eye
17
brain
14
embryo
8
limb
7
musculature of body
5
nerve
4
skeleton
2
spleen
1
pericardium
1
spinal cord
Project
339
AMP
100
HPAP
9
T1D
Genome assembly (visualization)
328
GRCh38
324
hg19
Lab
335
AMP-T2D consortium
100
Klaus Kaestner, Upenn
12
Kyle Gaulton, UCSD
1
Bing Ren, UCSD
Audit category:
33
inconsistent ontology term
BIOSAMPLE
ASSAY
448 results
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Clear Filters
total RNA-seq
WGBS
tissue
islet of Langerhans
278
body of pancreas
3
2
pancreas
2
2
primary cell
pancreatic alpha cell
52
31
pancreatic beta cell
21
16
pancreatic acinar cell
4
pancreatic ductal cell
4
cell line
EndoC_BH1
33
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