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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
344
total RNA-seq
238
ChIP-seq
104
ATAC-seq
80
single cell RNA-seq
11
snATAC-seq
10
MeRIP-seq
9
DNase-seq
6
Hi-C
6
WGBS
2
Capture-C
2
FAIRE-seq
2
RRBS
2
pCHi-C
2
small RNA-seq
1
CRISPR genome editing followed by sgRNA sequencing
Assay category
104
DNA accessibility
6
DNA methylation
Date released
20
November, 2019
18
May, 2022
16
May, 2021
14
September, 2018
11
February, 2023
6
November, 2018
6
October, 2017
5
September, 2017
4
March, 2019
4
March, 2020
3
August, 2017
3
October, 2019
Available data
72
bam
65
bed narrowPeak
53
fastq
38
bigWig
22
bigBed narrowPeak
6
bed bedMethyl
6
bigBed bedMethyl
2
bed broadPeak
2
tsv
Organism
110
Homo sapiens
Biosample type
69
tissue
22
primary cell
19
cell line
Organ
107
pancreas
75
kidney
55
heart
54
epithelium
48
blood vessel
48
vasculature
45
artery
31
connective tissue
28
eye
28
liver
12
adipose tissue
12
bone element
12
skeleton
9
limb
4
brain
3
spleen
2
musculature of body
1
blood
1
bodily fluid
1
nerve
1
pituitary gland
1
skin of body
Project
99
AMP
11
T1D
Genome assembly (visualization)
72
hg19
56
GRCh38
Lab
Klaus Kaestner, Upenn
76
AMP-T2D consortium
29
Kyle Gaulton, UCSD
2
Mark McCarthy, Oxford
1
Bing Ren, UCSD
1
Maike Sander, UCSD
1
Stephen Parker, UMich
Audit category:
19
inconsistent ontology term
lab.title!
Klaus Kaestner, Upenn
BIOSAMPLE
ASSAY
110 results
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Clear Filters
ATAC-seq
WGBS
tissue
islet of Langerhans
58
body of pancreas
4
2
spleen
1
2
pancreas
2
primary cell
pancreatic beta cell
7
pancreatic alpha cell
6
pancreatic acinar cell
5
pancreatic ductal cell
4
cell line
EndoC_BH1
19
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