Toggle navigation
Home
About
Project overview
Policies
News
Contact
Data
Experiments
Annotations
Single Cell Embeddings
Statistical Models
Gene Perturbations
Data Standards & QC
Pipelines
Consortia
Publications
Tools
Single Cell Browser
Help
Getting started
Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
403
total RNA-seq
218
ChIP-seq
152
ATAC-seq
74
single cell RNA-seq
51
WGBS
11
snATAC-seq
10
MeRIP-seq
9
Hi-C
8
DNase-seq
2
Capture-C
2
FAIRE-seq
2
RRBS
2
small RNA-seq
1
CRISPR genome editing followed by sgRNA sequencing
1
pCHi-C
Assay category
403
Transcription
9
3D chromatin structure
Date released
120
July, 2018
89
August, 2017
42
February, 2023
41
May, 2021
26
February, 2021
26
September, 2018
22
November, 2019
16
September, 2020
6
April, 2018
6
March, 2020
6
May, 2022
3
October, 2022
2
August, 2021
2
July, 2019
2
October, 2018
1
February, 2020
1
March, 2019
1
October, 2019
Available data
336
bam
332
tsv
331
bigWig
184
fastq
7
bedpe bed3+
7
hic
6
txt
3
cool
1
bed bed3+
1
bedpe
1
hdf5
Organism
412
Homo sapiens
Biosample type
293
tissue
84
primary cell
35
cell line
Organ
475
connective tissue
412
pancreas
398
adipose tissue
193
liver
139
epithelium
75
heart
66
blood vessel
66
vasculature
62
bone element
61
kidney
56
artery
20
brain
19
eye
14
embryo
12
musculature of body
11
limb
5
nerve
4
skeleton
2
vein
1
pericardium
1
spinal cord
Project
347
AMP
56
HPAP
9
T1D
Genome assembly (visualization)
338
hg19
331
GRCh38
Lab
341
AMP-T2D consortium
56
Klaus Kaestner, Upenn
12
Kyle Gaulton, UCSD
3
Bing Ren, UCSD
Audit category:
34
inconsistent ontology term
3
audit script error
Audit category:
1
inconsistent assembly
BIOSAMPLE
ASSAY
412 results
search-icon
table-tab-icon
Clear Filters
total RNA-seq
Hi-C
tissue
islet of Langerhans
284
3
body of pancreas
3
pancreas
2
1
primary cell
pancreatic alpha cell
52
1
pancreatic beta cell
21
1
pancreatic acinar cell
4
1
pancreatic ductal cell
4
cell line
EndoC_BH1
33
1
Panc1
1
Download