Toggle navigation
Home
About
Project overview
Policies
News
Contact
Data
Experiments
Annotations
Single Cell Embeddings
Statistical Models
Gene Perturbations
Data Standards & QC
Pipelines
Consortia
Publications
Tools
Single Cell Browser
Help
Getting started
Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
436
ChIP-seq
420
total RNA-seq
156
ATAC-seq
77
single cell RNA-seq
51
WGBS
40
DNase-seq
12
Hi-C
11
snATAC-seq
10
MeRIP-seq
6
small RNA-seq
4
RRBS
3
FAIRE-seq
3
pCHi-C
2
Capture-C
1
CRISPR genome editing followed by sgRNA sequencing
Assay category
420
Transcription
Date released
120
July, 2018
89
August, 2017
42
February, 2023
41
May, 2021
26
February, 2021
26
September, 2018
20
November, 2019
16
September, 2020
13
February, 2020
6
April, 2018
6
July, 2019
6
May, 2022
5
March, 2020
2
October, 2018
1
August, 2021
1
October, 2019
Available data
349
tsv
341
bam
335
bigWig
184
fastq
6
txt
Organism
420
Homo sapiens
Biosample type
306
tissue
81
primary cell
33
cell line
Organ
474
connective tissue
403
pancreas
398
adipose tissue
189
liver
131
epithelium
72
heart
62
bone element
61
blood vessel
61
vasculature
60
kidney
56
artery
19
eye
17
brain
14
embryo
7
limb
6
musculature of body
5
nerve
4
skeleton
1
pericardium
1
spinal cord
Project
358
AMP
53
HPAP
9
T1D
Genome assembly (visualization)
335
GRCh38
335
hg19
Lab
354
AMP-T2D consortium
53
Klaus Kaestner, Upenn
12
Kyle Gaulton, UCSD
1
Bing Ren, UCSD
Audit category:
34
inconsistent ontology term
BIOSAMPLE
ASSAY
420 results
search-icon
table-tab-icon
Clear Filters
total RNA-seq
tissue
islet of Langerhans
284
body of pancreas
3
cerebellum
2
frontal cortex
2
pancreas
2
+ See 13 more…
primary cell
pancreatic alpha cell
52
pancreatic beta cell
21
pancreatic acinar cell
4
pancreatic ductal cell
4
cell line
EndoC_BH1
33
See all biosamples
Download