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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
420
total RNA-seq
282
ChIP-seq
165
ATAC-seq
78
single cell RNA-seq
51
WGBS
27
DNase-seq
13
Hi-C
11
snATAC-seq
10
MeRIP-seq
8
RRBS
3
FAIRE-seq
2
Capture-C
2
small RNA-seq
1
CRISPR genome editing followed by sgRNA sequencing
1
RNA microarray
1
pCHi-C
Assay category
420
Transcription
Date released
120
July, 2018
89
August, 2017
44
February, 2023
43
May, 2021
26
February, 2021
26
September, 2018
20
November, 2019
16
September, 2020
7
July, 2019
6
April, 2018
6
May, 2022
5
December, 2019
5
March, 2020
3
October, 2019
2
October, 2018
1
August, 2021
1
February, 2020
Available data
351
bam
349
tsv
345
bigWig
184
fastq
6
txt
Organism
420
Homo sapiens
Biosample type
291
tissue
93
primary cell
34
cell line
2
in vitro differentiated cells
Organ
474
connective tissue
403
pancreas
398
adipose tissue
189
liver
131
epithelium
72
heart
62
bone element
61
blood vessel
61
vasculature
60
kidney
56
artery
19
eye
17
brain
14
embryo
7
limb
6
musculature of body
5
nerve
4
skeleton
1
pericardium
1
spinal cord
Project
358
AMP
53
HPAP
9
T1D
Genome assembly (visualization)
345
GRCh38
345
hg19
Lab
354
AMP-T2D consortium
53
Klaus Kaestner, Upenn
12
Kyle Gaulton, UCSD
1
Bing Ren, UCSD
Audit category:
34
inconsistent ontology term
BIOSAMPLE
ASSAY
420 results
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Clear Filters
total RNA-seq
tissue
islet of Langerhans
284
body of pancreas
3
pancreas
2
pigmented layer of retina
2
primary cell
pancreatic alpha cell
52
pancreatic beta cell
21
hepatocyte
5
pancreatic acinar cell
4
pancreatic ductal cell
4
+ See 7 more…
cell line
EndoC_BH1
33
glomerular visceral epithelial cell
1
in vitro differentiated cells
endothelial cell
1
intermediate endothelial cell
1
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