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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
75
ATAC-seq
73
total RNA-seq
59
ChIP-seq
47
WGBS
11
snATAC-seq
7
Hi-C
4
MeRIP-seq
2
FAIRE-seq
2
RRBS
1
CRISPR genome editing followed by sgRNA sequencing
1
pCHi-C
Assay category
88
DNA accessibility
73
Transcription
59
DNA binding
49
DNA methylation
7
3D chromatin structure
Target of assay
46
control
15
histone
15
histone modification
9
broad histone mark
6
narrow histone mark
2
nucleotide modification
Date released
104
May, 2022
56
February, 2023
36
August, 2017
16
September, 2020
11
October, 2018
10
October, 2019
8
January, 2021
6
February, 2021
6
March, 2020
4
July, 2018
4
November, 2020
4
September, 2017
3
March, 2019
3
October, 2022
2
August, 2021
2
July, 2019
2
May, 2021
1
August, 2022
1
February, 2020
1
May, 2019
1
November, 2018
1
November, 2019
Available data
114
fastq
80
zippedFastqFolder
66
bam
26
bed narrowPeak
11
tagAlign
10
bigWig
10
tsv
7
bed broadPeak
6
bedpe bed3+
6
hic
6
txt
3
cool
2
bed bedMethyl
2
bigBed bedMethyl
2
bigBed narrowPeak
1
bedpe
Organism
280
Homo sapiens
Biosample type
154
primary cell
119
tissue
8
cell line
1
in vitro differentiated cells
Organ
282
pancreas
260
liver
196
epithelium
141
kidney
125
heart
110
connective tissue
68
brain
67
adipose tissue
55
eye
45
vasculature
43
blood vessel
42
musculature of body
26
limb
20
lung
15
blood
15
bodily fluid
13
artery
12
nerve
10
vein
9
bone element
9
spleen
8
skeleton
6
embryo
5
gonad
5
ovary
2
intestine
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
pericardium
1
pituitary gland
1
skin of body
1
small intestine
1
spinal cord
Project
142
HPAP
112
AMP
28
T1D
Genome assembly (visualization)
603
hg19
GRCh38
Lab
142
Klaus Kaestner, Upenn
80
AMP-T2D consortium
51
Kyle Gaulton, UCSD
4
Rohit N. Kulkarni, M.D., Ph.D.
3
Bing Ren, UCSD
1
Maike Sander, UCSD
1
Mark McCarthy, Oxford
Audit category:
inconsistent ontology term
4
audit script error
assembly!
GRCh38
audit.ERROR.category!
inconsistent ontology term
BIOSAMPLE
ASSAY
282 results
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Clear Filters
ATAC-seq
total RNA-seq
ChIP-seq
WGBS
snATAC-seq
Hi-C
MeRIP-seq
FAIRE-seq
RRBS
CRISPR genome editing followed by sgRNA sequencing
pCHi-C
primary cell
pancreatic alpha cell
22
42
6
31
1
pancreatic beta cell
13
11
6
16
1
pancreatic acinar cell
4
1
tissue
islet of Langerhans
36
18
25
7
3
4
1
1
pancreas
1
3
4
1
1
1
1
body of pancreas
1
9
endocrine pancreas
2
cell line
Panc1
7
EndoC_BH1
1
in vitro differentiated cells
pancreatic PP cell
1
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