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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
75
ATAC-seq
73
total RNA-seq
52
ChIP-seq
47
WGBS
11
snATAC-seq
7
Hi-C
4
MeRIP-seq
2
FAIRE-seq
2
RRBS
1
pCHi-C
Assay category
88
DNA accessibility
73
Transcription
52
DNA binding
49
DNA methylation
7
3D chromatin structure
Target of assay
40
control
14
histone
14
histone modification
8
broad histone mark
6
narrow histone mark
2
nucleotide modification
Date released
104
May, 2022
55
February, 2023
36
August, 2017
16
September, 2020
11
October, 2018
8
January, 2021
6
February, 2021
6
March, 2020
4
July, 2018
4
November, 2020
4
September, 2017
3
March, 2019
3
October, 2019
3
October, 2022
2
August, 2021
2
July, 2019
2
May, 2021
1
August, 2022
1
February, 2020
1
May, 2019
1
November, 2018
1
November, 2019
Available data
114
fastq
80
zippedFastqFolder
59
bam
26
bed narrowPeak
11
tagAlign
10
bigWig
10
tsv
7
bed broadPeak
6
bedpe bed3+
6
hic
6
txt
3
cool
2
bed bedMethyl
2
bigBed bedMethyl
2
bigBed narrowPeak
1
bedpe
Organism
273
Homo sapiens
Biosample type
154
primary cell
119
tissue
cell line
1
in vitro differentiated cells
Organ
274
pancreas
200
epithelium
142
kidney
127
liver
125
heart
118
connective tissue
93
bone element
69
brain
67
adipose tissue
55
eye
43
musculature of body
43
vasculature
41
blood vessel
26
limb
20
lung
12
nerve
11
artery
10
vein
9
spleen
8
blood
8
bodily fluid
8
embryo
8
skeleton
5
gonad
5
ovary
2
intestine
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
pericardium
1
pituitary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
142
HPAP
104
AMP
28
T1D
Genome assembly (visualization)
600
hg19
GRCh38
Lab
142
Klaus Kaestner, Upenn
72
AMP-T2D consortium
51
Kyle Gaulton, UCSD
4
Rohit N. Kulkarni, M.D., Ph.D.
3
Bing Ren, UCSD
1
Maike Sander, UCSD
1
Mark McCarthy, Oxford
Audit category:
4
audit script error
assembly!
GRCh38
biosample_type!
cell line
BIOSAMPLE
ASSAY
274 results
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ATAC-seq
total RNA-seq
ChIP-seq
WGBS
snATAC-seq
Hi-C
MeRIP-seq
FAIRE-seq
RRBS
pCHi-C
primary cell
pancreatic alpha cell
22
42
6
31
1
pancreatic beta cell
13
11
6
16
1
pancreatic acinar cell
4
1
tissue
islet of Langerhans
36
18
25
7
3
4
1
1
pancreas
1
3
4
1
1
1
1
body of pancreas
1
9
endocrine pancreas
2
in vitro differentiated cells
pancreatic PP cell
1
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