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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
79
ChIP-seq
74
single cell RNA-seq
61
total RNA-seq
33
ATAC-seq
1
DNase-seq
1
Hi-C
Assay category
135
Transcription
79
DNA binding
34
DNA accessibility
1
3D chromatin structure
Target of assay
77
histone
77
histone modification
41
narrow histone mark
36
broad histone mark
2
transcription factor
1
RNA binding protein
Date released
72
September, 2018
37
July, 2018
33
April, 2018
29
August, 2017
26
February, 2021
13
November, 2019
8
October, 2019
7
August, 2020
7
May, 2021
5
September, 2017
3
August, 2018
3
March, 2020
3
September, 2020
2
October, 2018
1
June, 2018
Available data
248
bigWig
238
bam
187
fastq
135
tsv
91
bed narrowPeak
29
bigBed narrowPeak
2
bed bed3+
2
tagAlign
1
bed broadPeak
1
bigBed broadPeak
1
hdf5
Organism
249
Homo sapiens
Biosample type
tissue
192
primary cell
55
cell line
2
in vitro differentiated cells
Organ
294
epithelium
293
liver
249
pancreas
86
connective tissue
86
vasculature
82
blood vessel
75
heart
66
artery
54
blood
54
bodily fluid
40
kidney
29
embryo
14
brain
12
vein
11
musculature of body
3
eye
2
adipose tissue
1
pericardium
Project
235
AMP
10
HPAP
4
T1D
Genome assembly (visualization)
249
GRCh38
245
hg19
Lab
239
AMP-T2D consortium
10
Klaus Kaestner, Upenn
Audit category:
52
inconsistent ontology term
Audit category:
44
missing controlled_by
Audit category:
4
inconsistent control read length
1
inconsistent assembly
biosample_type!
tissue
BIOSAMPLE
ASSAY
249 results
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ChIP-seq
single cell RNA-seq
total RNA-seq
ATAC-seq
DNase-seq
Hi-C
primary cell
pancreatic alpha cell
7
12
10
13
pancreatic beta cell
7
12
10
10
pancreatic ductal cell
13
10
4
4
pancreatic acinar cell
8
12
4
5
pancreatic endocrine cell
23
+ See 5 more…
cell line
EndoC_BH1
13
33
1
Panc1
6
1
1
in vitro differentiated cells
pancreatic PP cell
2
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