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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
330
total RNA-seq
163
ChIP-seq
74
single cell RNA-seq
71
ATAC-seq
8
Hi-C
6
DNase-seq
2
FAIRE-seq
2
RRBS
2
small RNA-seq
Assay category
71
DNA accessibility
Date released
20
November, 2019
18
May, 2022
14
September, 2018
5
October, 2017
5
September, 2017
4
March, 2020
3
August, 2017
2
March, 2019
Available data
64
bam
64
bed narrowPeak
45
fastq
31
bigWig
22
bigBed narrowPeak
2
tsv
1
bed broadPeak
Organism
71
Homo sapiens
Biosample type
46
tissue
22
primary cell
3
cell line
Organ
71
pancreas
38
epithelium
27
eye
25
connective tissue
23
liver
12
bone element
12
heart
12
skeleton
11
blood vessel
11
vasculature
10
artery
8
limb
6
adipose tissue
1
blood
1
bodily fluid
1
brain
1
musculature of body
1
nerve
1
spleen
Project
71
AMP
Genome assembly (visualization)
71
hg19
59
GRCh38
Lab
50
AMP-T2D consortium
18
Kyle Gaulton, UCSD
1
Bing Ren, UCSD
1
Mark McCarthy, Oxford
1
Stephen Parker, UMich
Audit category:
3
inconsistent ontology term
BIOSAMPLE
ASSAY
71 results
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ATAC-seq
tissue
islet of Langerhans
42
body of pancreas
4
primary cell
pancreatic beta cell
7
pancreatic alpha cell
6
pancreatic acinar cell
5
pancreatic ductal cell
4
cell line
EndoC_BH1
3
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