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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
79
ChIP-seq
74
single cell RNA-seq
61
total RNA-seq
25
ATAC-seq
5
Hi-C
1
DNase-seq
Assay category
135
Transcription
79
DNA binding
26
DNA accessibility
5
3D chromatin structure
Target of assay
77
histone
77
histone modification
41
narrow histone mark
36
broad histone mark
2
transcription factor
1
RNA binding protein
Date released
72
September, 2018
37
July, 2018
33
April, 2018
29
August, 2017
26
February, 2021
14
November, 2019
8
October, 2019
7
May, 2021
5
March, 2020
5
September, 2017
3
August, 2018
3
October, 2022
2
October, 2018
1
June, 2018
Available data
240
bigWig
238
bam
177
fastq
136
tsv
91
bed narrowPeak
29
bigBed narrowPeak
4
bedpe bed3+
4
hic
3
cool
2
bed bed3+
2
tagAlign
1
bed broadPeak
1
bigBed broadPeak
1
hdf5
Organism
245
Homo sapiens
Biosample type
tissue
185
primary cell
58
cell line
2
in vitro differentiated cells
Organ
357
liver
299
epithelium
245
pancreas
107
connective tissue
95
vasculature
89
blood vessel
75
heart
66
artery
55
blood
55
bodily fluid
37
kidney
29
embryo
21
brain
17
vein
12
musculature of body
4
eye
2
adipose tissue
1
pericardium
Project
238
AMP
4
T1D
3
HPAP
Genome assembly (visualization)
249
GRCh38
245
hg19
Lab
242
AMP-T2D consortium
3
Klaus Kaestner, Upenn
Audit category:
55
inconsistent ontology term
3
audit script error
Audit category:
44
missing controlled_by
Audit category:
4
inconsistent control read length
1
inconsistent assembly
biosample_type!
tissue
BIOSAMPLE
ASSAY
245 results
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ChIP-seq
single cell RNA-seq
total RNA-seq
ATAC-seq
Hi-C
DNase-seq
primary cell
pancreatic beta cell
7
12
10
7
1
pancreatic alpha cell
7
12
10
6
1
pancreatic ductal cell
13
10
4
4
pancreatic acinar cell
8
12
4
5
1
pancreatic endocrine cell
23
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cell line
EndoC_BH1
13
33
3
1
Panc1
6
1
1
in vitro differentiated cells
pancreatic PP cell
2
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