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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
94
ATAC-seq
73
total RNA-seq
55
ChIP-seq
47
WGBS
11
snATAC-seq
7
Hi-C
4
MeRIP-seq
2
RRBS
1
CRISPR genome editing followed by sgRNA sequencing
1
pCHi-C
Assay category
105
DNA accessibility
73
Transcription
55
DNA binding
49
DNA methylation
7
3D chromatin structure
Target of assay
48
control
9
histone
9
histone modification
5
broad histone mark
4
narrow histone mark
2
nucleotide modification
Date released
104
May, 2022
56
February, 2023
29
August, 2017
20
November, 2019
16
September, 2020
11
October, 2018
10
October, 2019
8
January, 2021
6
February, 2021
6
September, 2017
5
March, 2019
4
July, 2018
4
March, 2020
4
November, 2020
3
October, 2022
2
August, 2021
2
July, 2019
2
May, 2021
1
August, 2022
1
February, 2020
1
May, 2019
Available data
635
bam
bigWig
466
fastq
378
tsv
200
bed narrowPeak
91
bigBed narrowPeak
80
zippedFastqFolder
29
bed bed3+
21
bed broadPeak
19
tagAlign
7
bigBed broadPeak
6
bed bedMethyl
6
bedpe bed3+
6
bigBed bedMethyl
6
hic
6
txt
3
cool
1
bedpe
1
hdf5
Organism
293
Homo sapiens
Biosample type
154
primary cell
132
tissue
8
cell line
1
in vitro differentiated cells
Organ
295
pancreas
215
kidney
189
epithelium
168
liver
167
heart
105
connective tissue
81
vasculature
80
blood vessel
65
adipose tissue
63
brain
56
artery
55
eye
31
limb
27
musculature of body
20
lung
17
bone element
16
skeleton
14
blood
14
bodily fluid
12
nerve
9
spleen
7
vein
6
embryo
5
gonad
5
ovary
2
intestine
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
pericardium
1
pituitary gland
1
skin of body
1
small intestine
1
spinal cord
Project
142
HPAP
125
AMP
28
T1D
Genome assembly (visualization)
49
hg19
23
GRCh38
Lab
142
Klaus Kaestner, Upenn
91
AMP-T2D consortium
51
Kyle Gaulton, UCSD
4
Bing Ren, UCSD
4
Rohit N. Kulkarni, M.D., Ph.D.
2
Mark McCarthy, Oxford
1
Maike Sander, UCSD
Audit category:
inconsistent ontology term
4
audit script error
audit.ERROR.category!
inconsistent ontology term
files.file_type!
bigWig
BIOSAMPLE
ASSAY
295 results
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Clear Filters
ATAC-seq
total RNA-seq
ChIP-seq
WGBS
snATAC-seq
Hi-C
MeRIP-seq
RRBS
CRISPR genome editing followed by sgRNA sequencing
pCHi-C
primary cell
pancreatic alpha cell
22
42
6
31
1
pancreatic beta cell
13
11
6
16
1
pancreatic acinar cell
4
1
tissue
islet of Langerhans
55
18
21
7
3
4
1
pancreas
1
3
4
1
1
1
body of pancreas
1
9
endocrine pancreas
2
cell line
Panc1
7
EndoC_BH1
1
in vitro differentiated cells
pancreatic PP cell
1
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