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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
21
ChIP-seq
7
DNase-seq
1
Hi-C
Assay category
21
DNA binding
7
DNA accessibility
1
3D chromatin structure
Target of assay
12
histone
12
histone modification
7
transcription factor
6
broad histone mark
6
narrow histone mark
2
RNA binding protein
2
control
Date released
19
August, 2017
4
June, 2019
2
November, 2018
2
October, 2019
2
September, 2017
Available data
635
bam
570
bigWig
466
fastq
378
tsv
200
bed narrowPeak
91
bigBed narrowPeak
80
zippedFastqFolder
29
bed bed3+
21
bed broadPeak
19
tagAlign
7
bigBed broadPeak
6
bed bedMethyl
6
bedpe bed3+
6
bigBed bedMethyl
6
hic
6
txt
3
cool
1
bedpe
1
hdf5
Organism
29
Homo sapiens
Biosample type
27
tissue
2
cell line
Organ
77
kidney
35
brain
35
limb
33
musculature of body
29
heart
29
pancreas
24
connective tissue
20
epithelium
18
ureter
13
liver
12
vasculature
11
blood vessel
6
adipose tissue
4
artery
4
eye
3
embryo
2
nerve
2
vein
1
spleen
Project
29
AMP
Genome assembly (visualization)
29
GRCh38
27
hg19
Lab
29
AMP-T2D consortium
Audit category:
10
missing controlled_by
Audit category:
1
inconsistent assembly
audit.ERROR.category!
inconsistent ontology term
BIOSAMPLE
ASSAY
29 results
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Clear Filters
ChIP-seq
DNase-seq
Hi-C
tissue
islet of Langerhans
21
body of pancreas
4
pancreas
2
cell line
Panc1
1
1
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