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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
62
total RNA-seq
60
ATAC-seq
47
WGBS
10
snATAC-seq
ChIP-seq
3
Hi-C
Assay category
70
DNA accessibility
62
Transcription
47
DNA methylation
3
3D chromatin structure
Date released
80
May, 2022
55
February, 2023
19
September, 2020
8
January, 2021
7
August, 2020
6
February, 2021
4
March, 2020
3
October, 2022
Available data
80
zippedFastqFolder
69
fastq
12
bigWig
8
tsv
3
bedpe bed3+
3
cool
3
hic
2
bam
Organism
182
Homo sapiens
Biosample type
152
primary cell
28
tissue
2
cell line
Organ
182
pancreas
154
epithelium
47
kidney
19
lung
8
blood
8
bodily fluid
1
bone element
1
bone marrow
1
connective tissue
1
thymus
Project
AMP
152
HPAP
30
T1D
Genome assembly (visualization)
12
GRCh38
5
hg19
Lab
152
Klaus Kaestner, Upenn
26
Kyle Gaulton, UCSD
4
AMP-T2D consortium
Audit category:
3
audit script error
2
inconsistent ontology term
award.project!
AMP
assay_title!
ChIP-seq
BIOSAMPLE
ASSAY
182 results
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total RNA-seq
ATAC-seq
WGBS
snATAC-seq
Hi-C
primary cell
pancreatic alpha cell
42
29
31
1
pancreatic beta cell
11
16
16
1
pancreatic acinar cell
4
1
tissue
islet of Langerhans
7
11
6
pancreas
4
cell line
EndoC_BH1
2
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