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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
total RNA-seq
60
ATAC-seq
47
WGBS
10
snATAC-seq
4
ChIP-seq
3
Hi-C
Assay category
70
DNA accessibility
47
DNA methylation
4
DNA binding
3
3D chromatin structure
Target of assay
4
histone
4
histone modification
4
narrow histone mark
Date released
80
May, 2022
13
February, 2023
8
January, 2021
7
August, 2020
6
February, 2021
3
March, 2020
3
October, 2022
3
September, 2020
1
May, 2021
Available data
80
zippedFastqFolder
16
fastq
14
bigWig
6
tsv
4
bam
4
bed narrowPeak
3
bedpe bed3+
3
cool
3
hic
Organism
124
Homo sapiens
Biosample type
99
primary cell
23
tissue
2
cell line
Organ
124
pancreas
101
epithelium
47
kidney
19
lung
8
blood
8
bodily fluid
1
bone element
1
bone marrow
1
connective tissue
1
thymus
Project
AMP
99
HPAP
25
T1D
Genome assembly (visualization)
14
GRCh38
7
hg19
Lab
99
Klaus Kaestner, Upenn
21
Kyle Gaulton, UCSD
4
AMP-T2D consortium
Audit category:
3
audit script error
2
inconsistent ontology term
award.project!
AMP
assay_title!
total RNA-seq
BIOSAMPLE
ASSAY
124 results
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ATAC-seq
WGBS
snATAC-seq
ChIP-seq
Hi-C
primary cell
pancreatic alpha cell
29
31
1
pancreatic beta cell
16
16
1
pancreatic acinar cell
4
1
tissue
islet of Langerhans
11
6
2
pancreas
4
cell line
EndoC_BH1
2
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