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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
133
ATAC-seq
11
snATAC-seq
7
DNase-seq
2
FAIRE-seq
Assay category
446
Transcription
190
DNA binding
153
DNA accessibility
53
DNA methylation
7
3D chromatin structure
Date released
57
May, 2022
19
November, 2019
14
September, 2018
13
February, 2023
8
January, 2021
7
August, 2020
5
August, 2017
5
October, 2017
5
September, 2017
4
June, 2019
4
March, 2019
3
November, 2018
3
October, 2019
3
September, 2020
2
March, 2020
1
August, 2022
Available data
73
bam
72
bed narrowPeak
61
fastq
48
bigWig
39
zippedFastqFolder
31
bigBed narrowPeak
8
bed broadPeak
6
bed bed3+
6
bigBed broadPeak
1
tsv
Organism
153
Homo sapiens
Biosample type
82
tissue
71
primary cell
cell line
Organ
162
kidney
153
pancreas
103
epithelium
69
heart
50
vasculature
48
blood vessel
44
limb
41
artery
37
brain
35
musculature of body
34
connective tissue
32
eye
28
liver
18
ureter
12
bone element
12
skeleton
10
lung
8
adipose tissue
8
blood
8
bodily fluid
3
nerve
3
vein
2
spleen
1
pituitary gland
1
skin of body
Project
83
AMP
49
HPAP
21
T1D
Genome assembly (visualization)
75
hg19
65
GRCh38
Lab
60
AMP-T2D consortium
49
Klaus Kaestner, Upenn
39
Kyle Gaulton, UCSD
2
Mark McCarthy, Oxford
1
Bing Ren, UCSD
1
Maike Sander, UCSD
1
Stephen Parker, UMich
Audit category:
1
audit script error
biosample_type!
cell line
BIOSAMPLE
ASSAY
153 results
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ATAC-seq
snATAC-seq
DNase-seq
FAIRE-seq
tissue
islet of Langerhans
58
7
1
1
body of pancreas
4
4
pancreas
4
2
1
primary cell
pancreatic alpha cell
35
pancreatic beta cell
23
pancreatic acinar cell
9
pancreatic ductal cell
4
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