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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
289
total RNA-seq
117
ChIP-seq
62
ATAC-seq
11
snATAC-seq
4
Hi-C
4
MeRIP-seq
4
WGBS
2
FAIRE-seq
2
RRBS
2
small RNA-seq
1
DNase-seq
1
pCHi-C
Assay category
291
Transcription
117
DNA binding
76
DNA accessibility
6
DNA methylation
4
3D chromatin structure
Target of assay
73
histone
73
histone modification
41
broad histone mark
32
narrow histone mark
29
control
17
transcription factor
8
RNA binding protein
2
nucleotide modification
Date released
147
August, 2017
120
July, 2018
51
October, 2018
39
November, 2019
37
May, 2021
24
May, 2022
18
February, 2023
9
March, 2020
8
January, 2021
6
April, 2018
6
July, 2019
6
September, 2017
5
March, 2019
5
November, 2018
5
October, 2017
4
November, 2020
3
October, 2019
2
August, 2021
2
May, 2019
1
August, 2022
1
February, 2020
Available data
429
bam
373
bigWig
275
tsv
213
fastq
123
bed narrowPeak
62
bigBed narrowPeak
27
bed bed3+
20
bed broadPeak
16
tagAlign
6
bed bedMethyl
6
bigBed bedMethyl
bigBed broadPeak
6
txt
3
bedpe bed3+
3
hic
1
bedpe
Organism
492
Homo sapiens
Biosample type
499
tissue
346
primary cell
cell line
3
in vitro differentiated cells
Organ
545
connective tissue
499
pancreas
486
adipose tissue
358
liver
286
heart
238
brain
231
kidney
158
bone element
128
blood vessel
128
vasculature
86
limb
69
artery
53
eye
50
musculature of body
41
nerve
24
spleen
20
lung
16
skeleton
15
epithelium
5
gonad
5
ovary
2
intestine
2
pituitary gland
2
thymus
1
adrenal gland
1
esophagus
1
large intestine
1
lymph node
1
pericardium
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
469
AMP
30
T1D
Genome assembly (visualization)
409
hg19
380
GRCh38
Lab
436
AMP-T2D consortium
51
Kyle Gaulton, UCSD
4
Bing Ren, UCSD
4
Rohit N. Kulkarni, M.D., Ph.D.
2
Mark McCarthy, Oxford
1
Maike Sander, UCSD
1
Stephen Parker, UMich
Audit category:
1
audit script error
Audit category:
10
missing controlled_by
Audit category:
5
inconsistent control read length
1
inconsistent assembly
biosample_type!
cell line
files.file_type!
bigBed broadPeak
BIOSAMPLE
ASSAY
499 results
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total RNA-seq
ChIP-seq
ATAC-seq
snATAC-seq
Hi-C
MeRIP-seq
WGBS
FAIRE-seq
RRBS
small RNA-seq
DNase-seq
pCHi-C
tissue
islet of Langerhans
284
50
58
7
3
4
1
1
1
body of pancreas
3
35
4
2
2
pancreas
2
16
4
1
2
1
1
1
endocrine pancreas
16
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