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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
276
total RNA-seq
117
ChIP-seq
28
ATAC-seq
7
DNase-seq
4
WGBS
2
FAIRE-seq
2
Hi-C
2
RRBS
2
small RNA-seq
1
pCHi-C
1
snATAC-seq
Assay category
278
Transcription
117
DNA binding
38
DNA accessibility
6
DNA methylation
2
3D chromatin structure
Target of assay
73
histone
73
histone modification
41
broad histone mark
32
narrow histone mark
27
control
17
transcription factor
8
RNA binding protein
Date released
147
August, 2017
120
July, 2018
51
October, 2018
39
November, 2019
36
May, 2021
9
March, 2020
7
November, 2018
6
April, 2018
6
July, 2019
6
September, 2017
4
June, 2019
4
October, 2017
3
October, 2019
2
May, 2019
1
August, 2022
1
February, 2020
Available data
404
bam
372
bigWig
274
tsv
187
fastq
105
bed narrowPeak
62
bigBed narrowPeak
27
bed bed3+
18
bed broadPeak
16
tagAlign
6
bed bedMethyl
6
bigBed bedMethyl
6
bigBed broadPeak
2
bedpe bed3+
2
hic
Organism
435
Homo sapiens
Biosample type
442
tissue
194
primary cell
cell line
3
in vitro differentiated cells
Organ
547
connective tissue
488
adipose tissue
442
pancreas
321
liver
273
heart
265
brain
158
bone element
133
blood vessel
133
vasculature
122
limb
110
kidney
82
musculature of body
73
artery
56
eye
43
nerve
25
spleen
18
ureter
16
skeleton
15
epithelium
5
gonad
5
ovary
2
intestine
2
pituitary gland
1
adrenal gland
1
esophagus
1
large intestine
1
lung
1
lymph node
1
pericardium
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
thymus
1
urinary bladder
Project
438
AMP
4
T1D
Genome assembly (visualization)
391
hg19
383
GRCh38
Lab
442
AMP-T2D consortium
51
Kyle Gaulton, UCSD
4
Bing Ren, UCSD
4
Rohit N. Kulkarni, M.D., Ph.D.
2
Mark McCarthy, Oxford
1
Maike Sander, UCSD
1
Stephen Parker, UMich
Audit category:
1
audit script error
Audit category:
10
missing controlled_by
Audit category:
5
inconsistent control read length
1
inconsistent assembly
biosample_type!
cell line
BIOSAMPLE
ASSAY
442 results
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total RNA-seq
ChIP-seq
ATAC-seq
DNase-seq
WGBS
FAIRE-seq
Hi-C
RRBS
small RNA-seq
pCHi-C
snATAC-seq
tissue
islet of Langerhans
272
50
24
1
1
1
1
1
body of pancreas
3
35
4
4
2
2
pancreas
1
16
2
2
1
1
1
1
endocrine pancreas
16
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