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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
94
ATAC-seq
73
total RNA-seq
48
ChIP-seq
47
WGBS
11
snATAC-seq
7
Hi-C
4
MeRIP-seq
2
RRBS
1
pCHi-C
Assay category
105
DNA accessibility
73
Transcription
49
DNA methylation
48
DNA binding
7
3D chromatin structure
Target of assay
42
control
8
histone
8
histone modification
4
broad histone mark
4
narrow histone mark
2
nucleotide modification
Date released
104
May, 2022
55
February, 2023
29
August, 2017
20
November, 2019
16
September, 2020
11
October, 2018
8
January, 2021
6
February, 2021
6
September, 2017
5
March, 2019
4
July, 2018
4
March, 2020
4
November, 2020
3
October, 2019
3
October, 2022
2
August, 2021
2
July, 2019
2
May, 2021
1
August, 2022
1
February, 2020
1
May, 2019
Available data
626
bam
bigWig
471
fastq
383
tsv
193
bed narrowPeak
84
bigBed narrowPeak
80
zippedFastqFolder
27
bed bed3+
20
bed broadPeak
19
tagAlign
6
bed bedMethyl
6
bedpe bed3+
6
bigBed bedMethyl
6
bigBed broadPeak
6
hic
6
txt
3
cool
1
bedpe
Organism
286
Homo sapiens
Biosample type
154
primary cell
132
tissue
cell line
1
in vitro differentiated cells
Organ
287
pancreas
216
kidney
194
epithelium
159
heart
114
connective tissue
101
bone element
100
liver
71
vasculature
70
blood vessel
66
adipose tissue
64
brain
55
eye
46
artery
31
limb
28
musculature of body
20
lung
16
skeleton
12
nerve
9
spleen
8
blood
8
bodily fluid
8
embryo
7
vein
5
gonad
5
ovary
2
intestine
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
pericardium
1
pituitary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
urinary bladder
Project
142
HPAP
117
AMP
28
T1D
Genome assembly (visualization)
49
hg19
23
GRCh38
Lab
142
Klaus Kaestner, Upenn
83
AMP-T2D consortium
51
Kyle Gaulton, UCSD
4
Bing Ren, UCSD
4
Rohit N. Kulkarni, M.D., Ph.D.
2
Mark McCarthy, Oxford
1
Maike Sander, UCSD
Audit category:
4
audit script error
biosample_type!
cell line
organ_slims!
urinary bladder
files.file_type!
bigWig
BIOSAMPLE
ASSAY
287 results
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Clear Filters
ATAC-seq
total RNA-seq
ChIP-seq
WGBS
snATAC-seq
Hi-C
MeRIP-seq
RRBS
pCHi-C
primary cell
pancreatic alpha cell
22
42
6
31
1
pancreatic beta cell
13
11
6
16
1
pancreatic acinar cell
4
1
tissue
islet of Langerhans
55
18
21
7
3
4
1
pancreas
1
3
4
1
1
1
body of pancreas
1
9
endocrine pancreas
2
in vitro differentiated cells
pancreatic PP cell
1
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