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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
122
ChIP-seq
Assay category
446
Transcription
153
DNA accessibility
122
DNA binding
53
DNA methylation
7
3D chromatin structure
Target of assay
132
histone
132
histone modification
broad histone mark
64
narrow histone mark
40
control
18
transcription factor
8
RNA binding protein
Date released
62
August, 2017
32
October, 2018
15
September, 2018
6
September, 2017
3
May, 2021
2
March, 2020
2
May, 2019
Available data
110
bam
95
fastq
78
bigWig
62
bed narrowPeak
26
bigBed narrowPeak
15
bed bed3+
11
tagAlign
4
bed broadPeak
Organism
119
Homo sapiens
Biosample type
76
tissue
43
primary cell
cell line
3
in vitro differentiated cells
Organ
148
brain
141
liver
122
pancreas
109
connective tissue
76
epithelium
71
heart
53
adipose tissue
51
vasculature
48
blood vessel
32
limb
27
kidney
19
musculature of body
19
nerve
18
embryo
16
spleen
14
artery
8
vein
5
eye
4
gonad
4
ovary
1
lymph node
1
pituitary gland
Project
120
AMP
2
T1D
Genome assembly (visualization)
80
hg19
78
GRCh38
Lab
122
AMP-T2D consortium
Audit category:
32
missing controlled_by
Audit category:
6
inconsistent control read length
biosample_type!
cell line
target.investigated_as!
broad histone mark
BIOSAMPLE
ASSAY
122 results
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Clear Filters
ChIP-seq
tissue
islet of Langerhans
36
body of pancreas
24
endocrine pancreas
8
pancreas
8
primary cell
pancreatic endocrine cell
12
pancreatic alpha cell
10
pancreatic beta cell
10
pancreatic ductal cell
7
pancreatic acinar cell
4
in vitro differentiated cells
pancreatic PP cell
3
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