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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
118
ChIP-seq
114
total RNA-seq
90
ATAC-seq
74
single cell RNA-seq
47
WGBS
7
Hi-C
6
MeRIP-seq
3
DNase-seq
2
Capture-C
1
CRISPR genome editing followed by sgRNA sequencing
1
FAIRE-seq
Assay category
188
Transcription
118
DNA binding
94
DNA accessibility
47
DNA methylation
7
3D chromatin structure
Target of assay
93
histone
93
histone modification
47
narrow histone mark
46
broad histone mark
26
control
3
nucleotide modification
2
transcription factor
1
RNA binding protein
Date released
80
May, 2022
72
September, 2018
41
August, 2017
38
February, 2023
37
July, 2018
36
October, 2019
33
April, 2018
32
February, 2021
24
May, 2021
19
September, 2020
16
November, 2019
7
August, 2020
6
March, 2020
6
November, 2020
5
September, 2017
3
August, 2018
3
October, 2022
2
August, 2021
2
October, 2018
1
June, 2018
Available data
280
bam
265
bigWig
258
fastq
142
tsv
104
bed narrowPeak
80
zippedFastqFolder
42
bigBed narrowPeak
6
hic
5
bed broadPeak
5
bedpe bed3+
5
bigBed broadPeak
4
bed bed3+
3
cool
3
tagAlign
1
hdf5
1
tar
Organism
462
Homo sapiens
Biosample type
tissue
368
primary cell
92
cell line
3
in vitro differentiated cells
Organ
509
epithelium
441
pancreas
430
liver
137
connective tissue
103
vasculature
97
blood vessel
80
heart
69
blood
69
bodily fluid
68
artery
55
kidney
37
embryo
22
vein
21
brain
14
musculature of body
5
eye
3
adipose tissue
1
bone element
1
bone marrow
1
mammary gland
1
pericardium
Project
307
AMP
152
HPAP
4
T1D
Genome assembly (visualization)
262
hg19
261
GRCh38
Lab
305
AMP-T2D consortium
152
Klaus Kaestner, Upenn
6
Rohit N. Kulkarni, M.D., Ph.D.
Audit category:
81
inconsistent ontology term
4
audit script error
Audit category:
44
missing controlled_by
Audit category:
4
inconsistent control read length
1
inconsistent assembly
biosample_type!
tissue
BIOSAMPLE
ASSAY
463 results
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Clear Filters
ChIP-seq
total RNA-seq
ATAC-seq
single cell RNA-seq
WGBS
Hi-C
MeRIP-seq
DNase-seq
Capture-C
CRISPR genome editing followed by sgRNA sequencing
FAIRE-seq
primary cell
pancreatic alpha cell
13
52
35
12
31
1
pancreatic beta cell
13
21
23
12
16
1
pancreatic acinar cell
8
4
9
12
1
pancreatic ductal cell
13
4
4
10
pancreatic endocrine cell
23
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cell line
EndoC_BH1
15
33
19
1
6
2
1
Panc1
13
1
1
in vitro differentiated cells
pancreatic PP cell
3
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