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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
38
ChIP-seq
37
total RNA-seq
19
ATAC-seq
6
MeRIP-seq
2
Capture-C
2
DNase-seq
2
Hi-C
2
STARR-seq
2
pCHi-C
1
CRISPR genome editing followed by sgRNA sequencing
Assay category
38
DNA binding
37
Transcription
21
DNA accessibility
2
3D chromatin structure
Target of assay
19
histone
19
histone modification
14
control
10
broad histone mark
9
narrow histone mark
8
transcription factor
7
recombinant protein
3
nucleotide modification
1
RNA binding protein
Date released
30
October, 2019
26
February, 2021
21
May, 2021
16
November, 2019
7
March, 2020
6
November, 2020
4
August, 2021
1
February, 2023
Available data
78
bam
68
bigWig
40
tsv
29
bed narrowPeak
8
bigBed narrowPeak
2
bed bed3+
1
bed broadPeak
1
bedpe bed3+
1
bigBed broadPeak
1
hdf5
1
hic
Organism
110
Homo sapiens
Biosample type
804
tissue
382
primary cell
111
cell line
3
in vitro differentiated cells
Organ
401
liver
92
pancreas
79
epithelium
66
artery
66
blood vessel
66
heart
66
vasculature
61
blood
61
bodily fluid
19
kidney
8
embryo
1
mammary gland
Project
107
AMP
4
T1D
Genome assembly (visualization)
70
hg19
67
GRCh38
Lab
103
AMP-T2D consortium
6
Rohit N. Kulkarni, M.D., Ph.D.
2
Bing Ren, UCSD
Audit category:
91
inconsistent ontology term
Audit category:
1
inconsistent assembly
BIOSAMPLE
ASSAY
111 results
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Clear Filters
ChIP-seq
total RNA-seq
ATAC-seq
MeRIP-seq
Capture-C
DNase-seq
Hi-C
STARR-seq
pCHi-C
CRISPR genome editing followed by sgRNA sequencing
cell line
EndoC_BH1
15
33
19
6
2
1
1
Panc1
13
1
1
RCC 7860 HIF1a re-expression
4
1
RCC 7860 vector
3
1
1
RCC 7860 HIF2a over-expression
3
1
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