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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
33
total RNA-seq
20
ChIP-seq
19
ATAC-seq
3
MeRIP-seq
2
Capture-C
2
Hi-C
1
CRISPR genome editing followed by sgRNA sequencing
1
DNase-seq
Assay category
33
Transcription
20
DNA accessibility
20
DNA binding
2
3D chromatin structure
Target of assay
19
histone
19
histone modification
control
10
broad histone mark
9
narrow histone mark
3
nucleotide modification
1
RNA binding protein
1
transcription factor
Date released
26
February, 2021
21
May, 2021
14
November, 2019
9
October, 2019
5
March, 2020
3
November, 2020
2
August, 2021
1
February, 2023
Available data
56
bigWig
55
bam
34
tsv
21
bed narrowPeak
7
bigBed narrowPeak
2
bed bed3+
1
bed broadPeak
1
bedpe bed3+
1
bigBed broadPeak
1
hdf5
1
hic
Organism
80
Homo sapiens
Biosample type
476
tissue
334
primary cell
81
cell line
2
in vitro differentiated cells
Organ
341
liver
81
pancreas
74
epithelium
64
artery
64
blood vessel
64
heart
64
vasculature
55
blood
55
bodily fluid
16
kidney
8
embryo
1
mammary gland
Project
77
AMP
4
T1D
Genome assembly (visualization)
58
hg19
55
GRCh38
Lab
78
AMP-T2D consortium
3
Rohit N. Kulkarni, M.D., Ph.D.
Audit category:
71
inconsistent ontology term
Audit category:
1
inconsistent assembly
target.investigated_as!
control
BIOSAMPLE
ASSAY
81 results
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total RNA-seq
ChIP-seq
ATAC-seq
MeRIP-seq
Capture-C
Hi-C
CRISPR genome editing followed by sgRNA sequencing
DNase-seq
cell line
EndoC_BH1
33
13
19
3
2
1
1
Panc1
7
1
1
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