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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
289
total RNA-seq
ChIP-seq
62
ATAC-seq
11
snATAC-seq
7
DNase-seq
4
Hi-C
4
MeRIP-seq
4
WGBS
2
FAIRE-seq
2
RRBS
2
small RNA-seq
1
pCHi-C
Assay category
291
Transcription
82
DNA accessibility
6
DNA methylation
4
3D chromatin structure
Target of assay
2
control
2
nucleotide modification
Date released
120
July, 2018
91
August, 2017
39
November, 2019
37
May, 2021
24
May, 2022
18
February, 2023
8
January, 2021
7
March, 2020
7
November, 2018
6
April, 2018
6
July, 2019
5
March, 2019
5
October, 2017
4
June, 2019
4
November, 2020
3
October, 2019
2
August, 2021
1
August, 2022
1
February, 2020
Available data
332
bam
291
bigWig
275
tsv
136
fastq
50
bed narrowPeak
9
bigBed narrowPeak
8
bed broadPeak
6
bed bed3+
6
bed bedMethyl
6
bigBed bedMethyl
6
bigBed broadPeak
6
txt
3
bedpe bed3+
3
hic
1
bedpe
Organism
388
Homo sapiens
Biosample type
388
tissue
276
primary cell
64
cell line
Organ
473
connective tissue
415
adipose tissue
388
pancreas
272
kidney
206
liver
190
heart
158
bone element
60
blood vessel
60
vasculature
56
brain
56
limb
54
eye
53
musculature of body
45
artery
20
lung
18
ureter
16
skeleton
15
epithelium
8
nerve
5
spleen
2
intestine
2
thymus
1
adrenal gland
1
esophagus
1
gonad
1
large intestine
1
ovary
1
pericardium
1
pituitary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
360
AMP
28
T1D
Genome assembly (visualization)
329
hg19
308
GRCh38
Lab
325
AMP-T2D consortium
51
Kyle Gaulton, UCSD
4
Bing Ren, UCSD
4
Rohit N. Kulkarni, M.D., Ph.D.
2
Mark McCarthy, Oxford
1
Maike Sander, UCSD
1
Stephen Parker, UMich
Audit category:
1
audit script error
assay_title!
ChIP-seq
BIOSAMPLE
ASSAY
388 results
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total RNA-seq
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DNase-seq
Hi-C
MeRIP-seq
WGBS
FAIRE-seq
RRBS
small RNA-seq
pCHi-C
tissue
islet of Langerhans
284
58
7
1
3
4
1
1
body of pancreas
3
4
4
2
2
pancreas
2
4
2
1
2
1
1
1
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