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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
200
total RNA-seq
62
ATAC-seq
61
ChIP-seq
11
snATAC-seq
6
DNase-seq
4
Hi-C
4
MeRIP-seq
4
WGBS
2
RRBS
2
small RNA-seq
1
FAIRE-seq
1
pCHi-C
Assay category
202
Transcription
80
DNA accessibility
61
DNA binding
6
DNA methylation
4
3D chromatin structure
Target of assay
33
histone
33
histone modification
20
control
19
broad histone mark
14
narrow histone mark
10
transcription factor
6
RNA binding protein
2
nucleotide modification
Date released
August, 2017
120
July, 2018
51
October, 2018
39
November, 2019
37
May, 2021
24
May, 2022
18
February, 2023
9
March, 2020
8
January, 2021
7
November, 2018
6
April, 2018
6
July, 2019
6
September, 2017
5
March, 2019
5
October, 2017
4
June, 2019
4
November, 2020
3
October, 2019
2
August, 2021
2
May, 2019
1
August, 2022
1
February, 2020
Available data
302
bam
243
bigWig
186
tsv
91
bed narrowPeak
86
fastq
48
bigBed narrowPeak
8
bed bed3+
8
bed broadPeak
6
bed bedMethyl
6
bigBed bedMethyl
6
bigBed broadPeak
6
txt
3
bedpe bed3+
3
hic
1
bedpe
Organism
358
Homo sapiens
Biosample type
358
tissue
305
primary cell
92
cell line
3
in vitro differentiated cells
Organ
490
connective tissue
431
adipose tissue
358
pancreas
307
liver
299
kidney
273
heart
265
brain
158
bone element
133
blood vessel
133
vasculature
122
limb
73
artery
56
eye
56
musculature of body
43
nerve
25
spleen
20
lung
18
ureter
16
skeleton
15
epithelium
5
gonad
5
ovary
2
intestine
2
pituitary gland
2
thymus
1
adrenal gland
1
esophagus
1
large intestine
1
lymph node
1
pericardium
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
328
AMP
30
T1D
Genome assembly (visualization)
283
hg19
263
GRCh38
Lab
295
AMP-T2D consortium
51
Kyle Gaulton, UCSD
4
Bing Ren, UCSD
4
Rohit N. Kulkarni, M.D., Ph.D.
2
Mark McCarthy, Oxford
1
Maike Sander, UCSD
1
Stephen Parker, UMich
Audit category:
1
audit script error
Audit category:
1
inconsistent control read length
month_released!
August, 2017
BIOSAMPLE
ASSAY
358 results
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total RNA-seq
ATAC-seq
ChIP-seq
snATAC-seq
DNase-seq
Hi-C
MeRIP-seq
WGBS
RRBS
small RNA-seq
FAIRE-seq
pCHi-C
tissue
islet of Langerhans
195
58
8
7
3
4
1
body of pancreas
3
4
35
4
2
2
endocrine pancreas
16
pancreas
2
2
4
2
1
2
1
1
1
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