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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
289
total RNA-seq
137
ChIP-seq
63
ATAC-seq
11
snATAC-seq
8
DNase-seq
6
WGBS
4
Hi-C
4
MeRIP-seq
2
FAIRE-seq
2
RRBS
2
pCHi-C
2
small RNA-seq
Assay category
291
Transcription
137
DNA binding
84
DNA accessibility
8
DNA methylation
4
3D chromatin structure
Target of assay
79
histone
79
histone modification
45
broad histone mark
37
control
34
narrow histone mark
23
transcription factor
8
RNA binding protein
3
other context
3
other post-translational modification
2
nucleotide modification
Date released
147
August, 2017
120
July, 2018
51
October, 2018
39
November, 2019
37
May, 2021
24
May, 2022
18
February, 2023
16
November, 2018
10
March, 2020
8
January, 2021
7
December, 2018
7
January, 2019
6
April, 2018
6
July, 2019
6
October, 2017
6
September, 2017
5
March, 2019
4
June, 2019
4
November, 2020
3
October, 2019
2
August, 2021
2
May, 2019
1
August, 2022
1
February, 2020
Available data
453
bam
389
bigWig
276
tsv
237
fastq
137
bed narrowPeak
75
bigBed narrowPeak
28
bed bed3+
21
bed broadPeak
16
tagAlign
8
bed bedMethyl
8
bigBed bedMethyl
7
bigBed broadPeak
6
txt
3
bedpe bed3+
3
hic
1
bedpe
Organism
523
Homo sapiens
Biosample type
530
tissue
346
primary cell
92
cell line
3
in vitro differentiated cells
Organ
547
connective tissue
505
pancreas
488
adipose tissue
361
liver
299
kidney
273
heart
265
brain
158
bone element
133
blood vessel
133
vasculature
122
limb
82
musculature of body
73
artery
56
eye
43
nerve
25
spleen
20
lung
18
ureter
16
skeleton
15
epithelium
5
gonad
5
ovary
2
intestine
2
pituitary gland
2
thymus
1
adrenal gland
1
esophagus
1
large intestine
1
lymph node
1
pericardium
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
500
AMP
30
T1D
Genome assembly (visualization)
427
hg19
402
GRCh38
Lab
467
AMP-T2D consortium
51
Kyle Gaulton, UCSD
4
Bing Ren, UCSD
4
Rohit N. Kulkarni, M.D., Ph.D.
2
Mark McCarthy, Oxford
1
Maike Sander, UCSD
1
Stephen Parker, UMich
Audit category:
1
audit script error
Audit category:
10
missing controlled_by
Audit category:
5
inconsistent control read length
1
inconsistent assembly
BIOSAMPLE
ASSAY
530 results
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Clear Filters
total RNA-seq
ChIP-seq
ATAC-seq
snATAC-seq
DNase-seq
WGBS
Hi-C
MeRIP-seq
FAIRE-seq
RRBS
pCHi-C
small RNA-seq
tissue
islet of Langerhans
284
50
58
7
1
3
4
1
1
body of pancreas
3
35
4
4
2
2
pancreas
2
16
4
2
2
1
1
1
1
spleen
20
1
1
2
1
endocrine pancreas
16
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