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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
289
total RNA-seq
90
ChIP-seq
62
ATAC-seq
11
snATAC-seq
7
DNase-seq
4
Hi-C
4
WGBS
2
FAIRE-seq
2
MeRIP-seq
2
RRBS
2
small RNA-seq
1
pCHi-C
Assay category
291
Transcription
90
DNA binding
82
DNA accessibility
6
DNA methylation
4
3D chromatin structure
Target of assay
73
histone
73
histone modification
41
broad histone mark
32
narrow histone mark
control
17
transcription factor
8
RNA binding protein
2
nucleotide modification
Date released
138
August, 2017
120
July, 2018
40
October, 2018
39
November, 2019
37
May, 2021
24
May, 2022
18
February, 2023
9
March, 2020
8
January, 2021
7
November, 2018
6
April, 2018
6
July, 2019
5
March, 2019
5
October, 2017
4
June, 2019
3
October, 2019
2
August, 2021
2
November, 2020
1
August, 2022
1
February, 2020
1
May, 2019
Available data
408
bam
373
bigWig
275
tsv
195
fastq
123
bed narrowPeak
62
bigBed narrowPeak
25
bed bed3+
20
bed broadPeak
14
tagAlign
6
bed bedMethyl
6
bigBed bedMethyl
6
bigBed broadPeak
6
txt
3
bedpe bed3+
3
hic
1
bedpe
Organism
470
Homo sapiens
Biosample type
476
tissue
334
primary cell
81
cell line
2
in vitro differentiated cells
Organ
523
connective tissue
476
pancreas
464
adipose tissue
315
liver
293
kidney
257
heart
240
brain
158
bone element
117
blood vessel
117
vasculature
105
limb
78
musculature of body
66
artery
56
eye
32
nerve
20
lung
18
ureter
17
spleen
16
skeleton
15
epithelium
5
gonad
5
ovary
2
intestine
2
pituitary gland
2
thymus
1
adrenal gland
1
esophagus
1
large intestine
1
lymph node
1
pericardium
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
446
AMP
30
T1D
Genome assembly (visualization)
411
hg19
384
GRCh38
Lab
415
AMP-T2D consortium
51
Kyle Gaulton, UCSD
4
Bing Ren, UCSD
2
Mark McCarthy, Oxford
2
Rohit N. Kulkarni, M.D., Ph.D.
1
Maike Sander, UCSD
1
Stephen Parker, UMich
Audit category:
1
audit script error
Audit category:
10
missing controlled_by
Audit category:
5
inconsistent control read length
1
inconsistent assembly
target.investigated_as!
control
BIOSAMPLE
ASSAY
476 results
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total RNA-seq
ChIP-seq
ATAC-seq
snATAC-seq
DNase-seq
Hi-C
WGBS
FAIRE-seq
MeRIP-seq
RRBS
small RNA-seq
pCHi-C
tissue
islet of Langerhans
284
37
58
7
1
3
1
2
1
body of pancreas
3
26
4
4
2
2
pancreas
2
13
4
2
1
2
1
1
1
endocrine pancreas
14
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