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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
184
total RNA-seq
126
ChIP-seq
69
single cell RNA-seq
56
ATAC-seq
10
WGBS
2
FAIRE-seq
1
DNase-seq
Assay category
253
Transcription
126
DNA binding
59
DNA accessibility
10
DNA methylation
Target of assay
88
histone
88
histone modification
46
broad histone mark
42
narrow histone mark
28
control
10
transcription factor
6
RNA binding protein
Date released
149
August, 2017
72
September, 2018
39
July, 2018
37
February, 2023
37
October, 2018
34
April, 2018
24
May, 2022
19
September, 2020
9
September, 2017
7
August, 2020
6
February, 2021
5
November, 2018
5
October, 2017
3
August, 2018
1
June, 2018
1
March, 2019
Available data
689
bam
623
bigWig
471
fastq
417
tsv
214
bed narrowPeak
91
bigBed narrowPeak
80
zippedFastqFolder
bed bed3+
21
bed broadPeak
19
tagAlign
7
bedpe bed3+
7
bigBed broadPeak
7
hic
6
bed bedMethyl
6
bigBed bedMethyl
6
txt
3
cool
1
bedpe
1
hdf5
Organism
441
Homo sapiens
Biosample type
258
primary cell
190
tissue
Organ
459
liver
448
pancreas
257
epithelium
89
connective tissue
60
blood
60
bodily fluid
39
adipose tissue
24
embryo
23
spleen
19
brain
6
vasculature
3
blood vessel
2
musculature of body
Project
379
AMP
69
HPAP
Genome assembly (visualization)
340
hg19
334
GRCh38
Lab
353
AMP-T2D consortium
69
Klaus Kaestner, Upenn
24
Kyle Gaulton, UCSD
1
Mark McCarthy, Oxford
1
Stephen Parker, UMich
Audit category:
5
inconsistent ontology term
Audit category:
44
missing controlled_by
Audit category:
9
inconsistent control read length
1
inconsistent assembly
files.file_type!
bed bed3+
BIOSAMPLE
ASSAY
448 results
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total RNA-seq
ChIP-seq
single cell RNA-seq
ATAC-seq
WGBS
FAIRE-seq
DNase-seq
primary cell
pancreatic alpha cell
52
13
12
13
6
pancreatic beta cell
21
13
12
10
pancreatic ductal cell
4
13
9
4
pancreatic acinar cell
4
8
9
5
pancreatic endocrine cell
23
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tissue
islet of Langerhans
103
7
20
1
1
body of pancreas
33
4
2
pancreas
16
2
1
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