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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
66
total RNA-seq
65
ATAC-seq
47
WGBS
10
MeRIP-seq
10
snATAC-seq
5
Hi-C
Assay category
75
DNA accessibility
66
Transcription
47
DNA methylation
5
3D chromatin structure
Target of assay
5
control
5
nucleotide modification
Date released
86
May, 2022
55
February, 2023
19
September, 2020
10
November, 2020
8
January, 2021
7
August, 2020
6
February, 2021
5
March, 2019
3
October, 2022
2
August, 2021
1
May, 2021
1
October, 2017
Available data
95
fastq
80
zippedFastqFolder
25
bam
bed narrowPeak
11
bigWig
7
tsv
6
txt
4
bedpe bed3+
4
hic
3
cool
2
bed broadPeak
1
bedpe
Organism
203
Homo sapiens
Biosample type
152
primary cell
45
tissue
6
cell line
Organ
203
pancreas
158
epithelium
127
kidney
37
liver
19
lung
8
blood
8
bodily fluid
3
connective tissue
1
bone element
1
bone marrow
1
thymus
Project
152
HPAP
26
T1D
25
AMP
Genome assembly (visualization)
13
GRCh38
7
hg19
Lab
AMP-T2D consortium
152
Klaus Kaestner, Upenn
33
Kyle Gaulton, UCSD
10
Rohit N. Kulkarni, M.D., Ph.D.
4
Bing Ren, UCSD
2
Mark McCarthy, Oxford
1
Maike Sander, UCSD
1
Stephen Parker, UMich
Audit category:
6
inconsistent ontology term
3
audit script error
files.file_type!
bed narrowPeak
lab.title!
AMP-T2D consortium
BIOSAMPLE
ASSAY
203 results
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Clear Filters
total RNA-seq
ATAC-seq
WGBS
MeRIP-seq
snATAC-seq
Hi-C
primary cell
pancreatic alpha cell
42
29
31
1
pancreatic beta cell
11
16
16
1
pancreatic acinar cell
4
1
tissue
islet of Langerhans
12
16
4
6
2
pancreas
1
4
cell line
EndoC_BH1
6
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