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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
397
total RNA-seq
218
ChIP-seq
152
ATAC-seq
80
single cell RNA-seq
51
WGBS
11
snATAC-seq
10
MeRIP-seq
8
DNase-seq
8
Hi-C
2
Capture-C
2
FAIRE-seq
2
RRBS
2
small RNA-seq
1
CRISPR genome editing followed by sgRNA sequencing
1
pCHi-C
Assay category
397
Transcription
2
DNA methylation
Date released
120
July, 2018
89
August, 2017
42
February, 2023
41
May, 2021
26
February, 2021
26
September, 2018
20
November, 2019
16
September, 2020
6
May, 2022
5
March, 2020
4
July, 2019
2
October, 2018
1
August, 2021
1
February, 2020
Available data
330
bam
326
tsv
324
bigWig
178
fastq
6
txt
2
bed bedMethyl
2
bigBed bedMethyl
Organism
399
Homo sapiens
Biosample type
285
tissue
81
primary cell
33
cell line
Organ
475
connective tissue
399
pancreas
398
adipose tissue
191
liver
137
epithelium
74
heart
64
kidney
62
bone element
62
vasculature
61
blood vessel
56
artery
20
eye
19
brain
14
embryo
11
musculature of body
7
limb
5
nerve
4
skeleton
2
pericardium
1
spinal cord
Project
337
AMP
53
HPAP
9
T1D
Genome assembly (visualization)
326
hg19
324
GRCh38
Lab
333
AMP-T2D consortium
53
Klaus Kaestner, Upenn
12
Kyle Gaulton, UCSD
1
Bing Ren, UCSD
Audit category:
33
inconsistent ontology term
files.file_type!
bedpe
BIOSAMPLE
ASSAY
399 results
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Clear Filters
total RNA-seq
RRBS
tissue
islet of Langerhans
278
1
body of pancreas
3
pancreas
2
1
primary cell
pancreatic alpha cell
52
pancreatic beta cell
21
pancreatic acinar cell
4
pancreatic ductal cell
4
cell line
EndoC_BH1
33
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