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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
388
total RNA-seq
214
ChIP-seq
141
ATAC-seq
80
single cell RNA-seq
51
WGBS
10
MeRIP-seq
8
DNase-seq
8
Hi-C
2
Capture-C
2
FAIRE-seq
2
RRBS
2
small RNA-seq
1
CRISPR genome editing followed by sgRNA sequencing
1
pCHi-C
1
snATAC-seq
Assay category
388
Transcription
Date released
120
July, 2018
89
August, 2017
41
May, 2021
37
February, 2023
26
February, 2021
26
September, 2018
20
November, 2019
16
September, 2020
6
May, 2022
2
July, 2019
2
October, 2018
1
August, 2021
1
February, 2020
1
March, 2020
Available data
328
bam
324
tsv
322
bigWig
178
fastq
6
txt
Organism
388
Homo sapiens
Biosample type
276
tissue
81
primary cell
31
cell line
Organ
474
connective tissue
398
adipose tissue
388
pancreas
189
liver
129
epithelium
72
heart
62
bone element
61
blood vessel
61
vasculature
60
kidney
56
artery
19
eye
17
brain
14
embryo
7
limb
6
musculature of body
5
nerve
4
skeleton
1
pericardium
1
spinal cord
Project
335
AMP
53
HPAP
T1D
Genome assembly (visualization)
322
GRCh38
322
hg19
Lab
327
AMP-T2D consortium
53
Klaus Kaestner, Upenn
7
Kyle Gaulton, UCSD
1
Bing Ren, UCSD
Audit category:
31
inconsistent ontology term
files.file_type!
bedpe
award.project!
T1D
BIOSAMPLE
ASSAY
388 results
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Clear Filters
total RNA-seq
tissue
islet of Langerhans
271
body of pancreas
3
pancreas
2
primary cell
pancreatic alpha cell
52
pancreatic beta cell
21
pancreatic acinar cell
4
pancreatic ductal cell
4
cell line
EndoC_BH1
31
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