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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
42
total RNA-seq
12
ATAC-seq
2
snATAC-seq
1
CRISPR genome editing followed by sgRNA sequencing
Assay category
42
Transcription
14
DNA accessibility
Date released
188
August, 2017
157
July, 2018
104
May, 2022
104
October, 2019
91
November, 2017
72
September, 2018
61
May, 2021
57
February, 2023
55
November, 2019
53
October, 2018
39
April, 2018
34
June, 2019
32
February, 2021
30
May, 2019
24
July, 2019
21
October, 2017
19
September, 2020
16
March, 2020
13
February, 2020
11
September, 2017
10
November, 2020
9
November, 2018
8
January, 2021
7
August, 2020
4
August, 2021
4
March, 2019
3
August, 2018
3
October, 2022
1
August, 2022
1
June, 2018
Available data
37
fastq
1
bed bed3
Organism
56
Homo sapiens
Biosample type
37
primary cell
19
tissue
1
cell line
Organ
56
pancreas
52
epithelium
36
heart
35
artery
35
blood vessel
35
vasculature
31
eye
14
connective tissue
8
bone element
8
skeleton
1
adipose tissue
1
brain
Project
37
HPAP
18
T1D
2
AMP
Genome assembly (visualization)
1
hg19
Lab
37
Klaus Kaestner, Upenn
18
Kyle Gaulton, UCSD
2
AMP-T2D consortium
files.file_type!
bedpe
BIOSAMPLE
ASSAY
57 results
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total RNA-seq
ATAC-seq
snATAC-seq
CRISPR genome editing followed by sgRNA sequencing
primary cell
pancreatic alpha cell
27
pancreatic beta cell
10
tissue
islet of Langerhans
5
11
2
brain
1
cell line
EndoC_BH1
1
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