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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
219
total RNA-seq
5
single cell RNA-seq
2
small RNA-seq
Assay category
226
Transcription
112
DNA accessibility
71
DNA binding
43
DNA methylation
9
3D chromatin structure
Date released
118
July, 2018
41
May, 2021
26
February, 2021
20
November, 2019
5
April, 2018
5
February, 2023
5
March, 2020
4
July, 2019
1
August, 2021
1
February, 2020
Available data
412
bam
408
tsv
406
bigWig
fastq
6
txt
Organism
226
Homo sapiens
Biosample type
188
tissue
33
cell line
5
primary cell
Organ
478
connective tissue
401
adipose tissue
226
pancreas
188
liver
166
heart
125
kidney
67
blood vessel
67
vasculature
62
bone element
58
artery
54
epithelium
24
brain
19
eye
10
embryo
9
lung
9
musculature of body
7
limb
5
nerve
4
skeleton
1
pericardium
1
spinal cord
Project
217
AMP
9
T1D
Genome assembly (visualization)
212
GRCh38
212
hg19
Lab
219
AMP-T2D consortium
6
Kyle Gaulton, UCSD
1
Bing Ren, UCSD
Audit category:
33
inconsistent ontology term
files.file_type!
fastq
BIOSAMPLE
ASSAY
226 results
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total RNA-seq
single cell RNA-seq
small RNA-seq
tissue
islet of Langerhans
181
body of pancreas
3
2
pancreas
2
cell line
EndoC_BH1
33
primary cell
pancreatic acinar cell
3
pancreatic ductal cell
1
pancreatic stellate cell
1
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